RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 C15orf54Q8N8G6 183 aa15.79■□□□□ 0.12
VPS28-208ENST00000527797 TRAV25A0A0B4J276 109 aa15.78■□□□□ 0.12
VPS28-208ENST00000527797 CXorf65A6NEN9 183 aa15.78■□□□□ 0.12
VPS28-208ENST00000527797 CD300EQ496F6 205 aaPredicted RBP15.78■□□□□ 0.12
VPS28-208ENST00000527797 TMEM78Q5T7P6 136 aa15.78■□□□□ 0.12
VPS28-208ENST00000527797 OR10J6PQ8NGY7 276 aa15.78■□□□□ 0.12
VPS28-208ENST00000527797 PRR27Q6MZM9 219 aa15.77■□□□□ 0.12
VPS28-208ENST00000527797 C9orf47Q6ZRZ4 202 aa15.77■□□□□ 0.12
VPS28-208ENST00000527797 PRR25Q96S07 402 aa15.77■□□□□ 0.12
VPS28-208ENST00000527797 ASCL2Q99929 193 aa15.77■□□□□ 0.12
VPS28-208ENST00000527797 NDFIP1Q9BT67 221 aa15.77■□□□□ 0.12
VPS28-208ENST00000527797 AGPAT4-IT1Q9H0P7 198 aa15.77■□□□□ 0.12
VPS28-208ENST00000527797 OSTCQ9NRP0 149 aa15.77■□□□□ 0.12
VPS28-208ENST00000527797 SAP30O75446 220 aa15.76■□□□□ 0.11
VPS28-208ENST00000527797 ZNF688P0C7X2 276 aa15.76■□□□□ 0.11
VPS28-208ENST00000527797 PSMG4Q5JS54 123 aa15.76■□□□□ 0.11
VPS28-208ENST00000527797 IBA57Q5T440 356 aaKnown RBP15.76■□□□□ 0.11
VPS28-208ENST00000527797 FAM24BQ8N5W8 94 aa15.76■□□□□ 0.11
VPS28-208ENST00000527797 Q8TAT8 98 aa15.76■□□□□ 0.11
VPS28-208ENST00000527797 RNASE7Q9H1E1 156 aaKnown RBP15.76■□□□□ 0.11
VPS28-208ENST00000527797 SETD2Q9BYW2 2564 aaPredicted RBP15.76■□□□□ 0.11
VPS28-208ENST00000527797 FAM231DQ6ZW35 169 aa15.76■□□□□ 0.11
VPS28-208ENST00000527797 LINC00482Q8N8I6 264 aa15.76■□□□□ 0.11
VPS28-208ENST00000527797 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.76■□□□□ 0.11
VPS28-208ENST00000527797 ZNF705DP0CH99 300 aaPredicted RBP15.75■□□□□ 0.11
VPS28-208ENST00000527797 ZNF705BP0CI00 300 aaPredicted RBP15.75■□□□□ 0.11
VPS28-208ENST00000527797 ZNF138P52744 262 aa15.75■□□□□ 0.11
VPS28-208ENST00000527797 OR8A1Q8NGG7 326 aa15.75■□□□□ 0.11
VPS28-208ENST00000527797 LINC00477Q96M19 166 aa15.75■□□□□ 0.11
VPS28-208ENST00000527797 C8orf49Q96NF6 230 aa15.75■□□□□ 0.11
VPS28-208ENST00000527797 SPAG8Q99932 426 aaPredicted RBP15.75■□□□□ 0.11
VPS28-208ENST00000527797 ZNF492Q9P255 531 aa15.75■□□□□ 0.11
VPS28-208ENST00000527797 NPIPB6E9PJ23 425 aa15.74■□□□□ 0.11
VPS28-208ENST00000527797 CT45A10P0DMU9 189 aa15.74■□□□□ 0.11
VPS28-208ENST00000527797 DAZAP1Q96EP5 407 aaKnown RBP15.74■□□□□ 0.11
VPS28-208ENST00000527797 ZC2HC1AQ96GY0 325 aa15.74■□□□□ 0.11
VPS28-208ENST00000527797 PPP1R14DQ9NXH3 145 aa15.74■□□□□ 0.11
VPS28-208ENST00000527797 F6UB75 175 aa15.73■□□□□ 0.11
VPS28-208ENST00000527797 DEFB1P60022 68 aa15.73■□□□□ 0.11
VPS28-208ENST00000527797 HIST1H1AQ02539 215 aaPredicted RBP15.73■□□□□ 0.11
VPS28-208ENST00000527797 COX8CQ7Z4L0 72 aa15.73■□□□□ 0.11
VPS28-208ENST00000527797 NUDT10Q8NFP7 164 aa15.73■□□□□ 0.11
VPS28-208ENST00000527797 NUDT11Q96G61 164 aa15.73■□□□□ 0.11
VPS28-208ENST00000527797 OR4C46A6NHA9 309 aa15.72■□□□□ 0.11
VPS28-208ENST00000527797 LINC00322Q6ZN03 302 aaPredicted RBP15.72■□□□□ 0.11
VPS28-208ENST00000527797 GPR61Q9BZJ8 451 aa15.72■□□□□ 0.11
VPS28-208ENST00000527797 URGCP-MRPS24S4R325 110 aa15.72■□□□□ 0.11
VPS28-208ENST00000527797 V9GYV3 84 aa15.72■□□□□ 0.11
VPS28-208ENST00000527797 JMJD1CQ15652 2540 aa15.72■□□□□ 0.11
VPS28-208ENST00000527797 ZNF705GA8MUZ8 300 aaPredicted RBP15.72■□□□□ 0.11
VPS28-208ENST00000527797 GATCO43716 136 aaKnown RBP15.72■□□□□ 0.11
VPS28-208ENST00000527797 S100PP25815 95 aa15.72■□□□□ 0.11
VPS28-208ENST00000527797 C19orf71A6NCJ1 209 aa15.71■□□□□ 0.11
VPS28-208ENST00000527797 SMUG1Q53HV7 270 aa15.71■□□□□ 0.11
VPS28-208ENST00000527797 EBLN2Q6P2I7 272 aa15.71■□□□□ 0.11
VPS28-208ENST00000527797 OR2K2Q8NGT1 345 aa15.71■□□□□ 0.11
VPS28-208ENST00000527797 IMMP2LQ96T52 175 aa15.71■□□□□ 0.11
VPS28-208ENST00000527797 ZNF747Q9BV97 191 aa15.71■□□□□ 0.11
VPS28-208ENST00000527797 LENEPQ9Y5L5 61 aa15.71■□□□□ 0.11
VPS28-208ENST00000527797 MAST4O15021 2626 aa15.7■□□□□ 0.1
VPS28-208ENST00000527797 IZUMO1RA6ND01 250 aa15.7■□□□□ 0.1
VPS28-208ENST00000527797 IGLV1-51P01701 117 aa15.7■□□□□ 0.1
VPS28-208ENST00000527797 P01737 135 aa15.7■□□□□ 0.1
VPS28-208ENST00000527797 KCNIP4Q6PIL6 250 aa15.7■□□□□ 0.1
VPS28-208ENST00000527797 PFN1P07737 140 aaKnown RBP15.69■□□□□ 0.1
VPS28-208ENST00000527797 ELOBQ15370 118 aa15.69■□□□□ 0.1
VPS28-208ENST00000527797 IL36BQ9NZH7 164 aa15.69■□□□□ 0.1
VPS28-208ENST00000527797 NIPBLQ6KC79 2804 aaeCLIP15.69■□□□□ 0.1
VPS28-208ENST00000527797 COLCA2A8K830 154 aa15.68■□□□□ 0.1
VPS28-208ENST00000527797 CRIP1P50238 77 aa15.68■□□□□ 0.1
VPS28-208ENST00000527797 DEFB131AP59861 70 aa15.68■□□□□ 0.1
VPS28-208ENST00000527797 FAM162BQ5T6X4 162 aa15.68■□□□□ 0.1
VPS28-208ENST00000527797 FOXI2Q6ZQN5 318 aa15.68■□□□□ 0.1
VPS28-208ENST00000527797 YPEL4Q96NS1 127 aa15.68■□□□□ 0.1
VPS28-208ENST00000527797 RPP21Q9H633 154 aaKnown RBP15.68■□□□□ 0.1
VPS28-208ENST00000527797 ZNF256Q9Y2P7 627 aaPredicted RBP15.68■□□□□ 0.1
VPS28-208ENST00000527797 TEP1Q99973 2627 aaKnown RBP15.68■□□□□ 0.1
VPS28-208ENST00000527797 A0A0J9YX75 114 aa15.68■□□□□ 0.1
VPS28-208ENST00000527797 C3orf56Q8N813 242 aa15.68■□□□□ 0.1
VPS28-208ENST00000527797 TMEM158Q8WZ71 300 aa15.68■□□□□ 0.1
VPS28-208ENST00000527797 SAV1Q9H4B6 383 aaPredicted RBP15.68■□□□□ 0.1
VPS28-208ENST00000527797 TRBV7-9A0A0J9YWB2 115 aa15.67■□□□□ 0.1
VPS28-208ENST00000527797 DUSP14O95147 198 aaKnown RBP15.67■□□□□ 0.1
VPS28-208ENST00000527797 CD33P20138 364 aa15.67■□□□□ 0.1
VPS28-208ENST00000527797 GDF5OSQ5U4N7 250 aa15.67■□□□□ 0.1
VPS28-208ENST00000527797 C12orf54Q6X4T0 127 aa15.67■□□□□ 0.1
VPS28-208ENST00000527797 OR4B1Q8NGF8 309 aa15.67■□□□□ 0.1
VPS28-208ENST00000527797 SH2D1AO60880 128 aa15.66■□□□□ 0.1
VPS28-208ENST00000527797 FAM3BP58499 235 aaPredicted RBP15.66■□□□□ 0.1
VPS28-208ENST00000527797 MAP6D1Q9H9H5 199 aa15.66■□□□□ 0.1
VPS28-208ENST00000527797 ZNF80P51504 273 aaPredicted RBP15.65■□□□□ 0.1
VPS28-208ENST00000527797 FAM19A4Q96LR4 140 aa15.65■□□□□ 0.1
VPS28-208ENST00000527797 TGIF2-C20orf24A0A0A6YYL0 155 aa15.65■□□□□ 0.1
VPS28-208ENST00000527797 FABP5P3A8MUU1 101 aa15.65■□□□□ 0.1
VPS28-208ENST00000527797 CA1P00915 261 aaPredicted RBP15.65■□□□□ 0.1
VPS28-208ENST00000527797 INSL3P51460 131 aa15.65■□□□□ 0.1
VPS28-208ENST00000527797 CT83Q5H943 113 aa15.65■□□□□ 0.1
VPS28-208ENST00000527797 OR2D3Q8NGH3 330 aa15.65■□□□□ 0.1
VPS28-208ENST00000527797 A0A1W2PPQ1 181 aa15.64■□□□□ 0.09
VPS28-208ENST00000527797 A8MWL6 223 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 150.4 ms