RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 PRIMA1Q86XR5 153 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 C8orf31Q8N9H6 132 aa12.96□□□□□ -0.33
PCDHA3-201ENST00000522353 MEGF9Q9H1U4 602 aa12.96□□□□□ -0.33
PCDHA3-201ENST00000522353 ANAPC10Q9UM13 185 aa12.96□□□□□ -0.33
PCDHA3-201ENST00000522353 FAM231BA6NCW3 169 aa12.96□□□□□ -0.34
PCDHA3-201ENST00000522353 AMN1Q8IY45 258 aa12.96□□□□□ -0.34
PCDHA3-201ENST00000522353 GATD1Q8NB37 220 aa12.96□□□□□ -0.34
PCDHA3-201ENST00000522353 C1orf147Q96MC9 270 aaPredicted RBP12.96□□□□□ -0.34
PCDHA3-201ENST00000522353 IGHV7-4-1A0A0J9YVY3 117 aa12.96□□□□□ -0.34
PCDHA3-201ENST00000522353 GAGE12BA1L429 117 aa12.96□□□□□ -0.34
PCDHA3-201ENST00000522353 GAGE7O76087 117 aa12.96□□□□□ -0.34
PCDHA3-201ENST00000522353 IGHV4-59P01825 116 aa12.96□□□□□ -0.34
PCDHA3-201ENST00000522353 GAGE12FP0CL80 117 aa12.96□□□□□ -0.34
PCDHA3-201ENST00000522353 GAGE12GP0CL81 117 aa12.96□□□□□ -0.34
PCDHA3-201ENST00000522353 GAGE12IP0CL82 117 aa12.96□□□□□ -0.34
PCDHA3-201ENST00000522353 DEFB104AQ8WTQ1 72 aa12.96□□□□□ -0.34
PCDHA3-201ENST00000522353 TANC1Q9C0D5 1861 aa12.95□□□□□ -0.34
PCDHA3-201ENST00000522353 CFHR3Q02985 330 aa12.95□□□□□ -0.34
PCDHA3-201ENST00000522353 SLAQ13239 276 aa12.95□□□□□ -0.34
PCDHA3-201ENST00000522353 GUSBP1Q15486 140 aa12.95□□□□□ -0.34
PCDHA3-201ENST00000522353 BCL6BQ8N143 479 aaPredicted RBP12.95□□□□□ -0.34
PCDHA3-201ENST00000522353 WT1-ASQ06250 92 aa12.95□□□□□ -0.34
PCDHA3-201ENST00000522353 KLK9Q9UKQ9 250 aa12.95□□□□□ -0.34
PCDHA3-201ENST00000522353 TRAV8-4A0A0B4J246 113 aa12.94□□□□□ -0.34
PCDHA3-201ENST00000522353 IGHV4-61A0A0C4DH41 118 aa12.94□□□□□ -0.34
PCDHA3-201ENST00000522353 MMP23AO75900 390 aa12.94□□□□□ -0.34
PCDHA3-201ENST00000522353 RSPO1Q2MKA7 263 aaPredicted RBP12.94□□□□□ -0.34
PCDHA3-201ENST00000522353 TIMM21Q9BVV7 248 aa12.94□□□□□ -0.34
PCDHA3-201ENST00000522353 SYS1-DBNDD2H3BUS1 97 aa12.94□□□□□ -0.34
PCDHA3-201ENST00000522353 C3orf79P0CE67 100 aa12.94□□□□□ -0.34
PCDHA3-201ENST00000522353 TMEM256Q8N2U0 113 aa12.94□□□□□ -0.34
PCDHA3-201ENST00000522353 DOCK9Q9BZ29 2069 aa12.94□□□□□ -0.34
PCDHA3-201ENST00000522353 ATP6V0BQ99437 205 aa12.94□□□□□ -0.34
PCDHA3-201ENST00000522353 CT83Q5H943 113 aa12.94□□□□□ -0.34
PCDHA3-201ENST00000522353 LEPROTO15243 131 aa12.93□□□□□ -0.34
PCDHA3-201ENST00000522353 HOXB4P17483 251 aaPredicted RBP12.93□□□□□ -0.34
PCDHA3-201ENST00000522353 PAX9P55771 341 aa12.93□□□□□ -0.34
PCDHA3-201ENST00000522353 ZC2HC1BQ5TFG8 222 aa12.93□□□□□ -0.34
PCDHA3-201ENST00000522353 OVOL2Q9BRP0 275 aa12.93□□□□□ -0.34
PCDHA3-201ENST00000522353 SPXQ9BT56 116 aa12.93□□□□□ -0.34
PCDHA3-201ENST00000522353 TMEM14CQ9P0S9 112 aa12.93□□□□□ -0.34
PCDHA3-201ENST00000522353 H3BRN7 92 aa12.92□□□□□ -0.34
PCDHA3-201ENST00000522353 CCL24O00175 119 aa12.92□□□□□ -0.34
PCDHA3-201ENST00000522353 FAM120AOSQ5T036 256 aa12.92□□□□□ -0.34
PCDHA3-201ENST00000522353 HIVEP2P31629 2446 aa12.92□□□□□ -0.34
PCDHA3-201ENST00000522353 ZNF524Q96C55 264 aa12.92□□□□□ -0.34
PCDHA3-201ENST00000522353 LINC00479Q96M42 142 aa12.92□□□□□ -0.34
PCDHA3-201ENST00000522353 INS-IGF2F8WCM5 200 aa12.92□□□□□ -0.34
PCDHA3-201ENST00000522353 DAZAP2Q15038 168 aaPredicted RBP12.92□□□□□ -0.34
PCDHA3-201ENST00000522353 TPSG1Q9NRR2 321 aa12.92□□□□□ -0.34
PCDHA3-201ENST00000522353 IGHV4-30-2A0A087WSY4 118 aa12.92□□□□□ -0.34
PCDHA3-201ENST00000522353 TNFRSF6BO95407 300 aa12.92□□□□□ -0.34
PCDHA3-201ENST00000522353 POU2AF1Q16633 256 aa12.92□□□□□ -0.34
PCDHA3-201ENST00000522353 ZNF134P52741 427 aa12.91□□□□□ -0.34
PCDHA3-201ENST00000522353 CTSZQ9UBR2 303 aa12.91□□□□□ -0.34
PCDHA3-201ENST00000522353 PLXNA4Q9HCM2 1894 aa12.91□□□□□ -0.34
PCDHA3-201ENST00000522353 SMKR1H3BMG3 65 aa12.91□□□□□ -0.34
PCDHA3-201ENST00000522353 LGALS1P09382 135 aaKnown RBP12.91□□□□□ -0.34
PCDHA3-201ENST00000522353 PRR31Q5SQ13 230 aa12.91□□□□□ -0.34
PCDHA3-201ENST00000522353 OR11H6Q8NGC7 330 aa12.91□□□□□ -0.34
PCDHA3-201ENST00000522353 TMEM243Q9BU79 118 aa12.91□□□□□ -0.34
PCDHA3-201ENST00000522353 LAMTOR3Q9UHA4 124 aa12.91□□□□□ -0.34
PCDHA3-201ENST00000522353 IGHV3-16A0A0C4DH30 117 aa12.91□□□□□ -0.34
PCDHA3-201ENST00000522353 WDR81Q562E7 1941 aa12.91□□□□□ -0.34
PCDHA3-201ENST00000522353 SONP18583 2426 aaKnown RBP12.91□□□□□ -0.34
PCDHA3-201ENST00000522353 I3L3M4 83 aa12.9□□□□□ -0.34
PCDHA3-201ENST00000522353 C9orf66Q5T8R8 295 aa12.9□□□□□ -0.34
PCDHA3-201ENST00000522353 PRSS46E5RG02 174 aa12.9□□□□□ -0.34
PCDHA3-201ENST00000522353 IGLC1P0CG04 106 aa12.9□□□□□ -0.34
PCDHA3-201ENST00000522353 NPC2P61916 151 aa12.9□□□□□ -0.34
PCDHA3-201ENST00000522353 OTOGLQ3ZCN5 2332 aa12.9□□□□□ -0.34
PCDHA3-201ENST00000522353 CENPVL3A0A0U1RRI6 287 aa12.9□□□□□ -0.34
PCDHA3-201ENST00000522353 hDV102S1A0JD36 115 aa12.9□□□□□ -0.34
PCDHA3-201ENST00000522353 VWC2Q2TAL6 325 aa12.9□□□□□ -0.34
PCDHA3-201ENST00000522353 PRR25Q96S07 402 aa12.9□□□□□ -0.34
PCDHA3-201ENST00000522353 HOXD3P31249 432 aaPredicted RBP12.9□□□□□ -0.35
PCDHA3-201ENST00000522353 DIAPH2-AS1Q14236 149 aa12.9□□□□□ -0.35
PCDHA3-201ENST00000522353 C10orf105Q8TEF2 133 aa12.9□□□□□ -0.35
PCDHA3-201ENST00000522353 ADCYAP1P18509 176 aa12.89□□□□□ -0.35
PCDHA3-201ENST00000522353 ZNRF2Q8NHG8 242 aa12.89□□□□□ -0.35
PCDHA3-201ENST00000522353 DKK4Q9UBT3 224 aa12.89□□□□□ -0.35
PCDHA3-201ENST00000522353 HEATR5AQ86XA9 2040 aa12.89□□□□□ -0.35
PCDHA3-201ENST00000522353 TECTAO75443 2155 aa12.89□□□□□ -0.35
PCDHA3-201ENST00000522353 ADORA2A-AS1P86434 159 aa12.89□□□□□ -0.35
PCDHA3-201ENST00000522353 FOXE3Q13461 319 aa12.89□□□□□ -0.35
PCDHA3-201ENST00000522353 FOXI2Q6ZQN5 318 aa12.89□□□□□ -0.35
PCDHA3-201ENST00000522353 TRAV12-2A0A075B6T6 113 aa12.89□□□□□ -0.35
PCDHA3-201ENST00000522353 IGLV3-1P01715 115 aa12.89□□□□□ -0.35
PCDHA3-201ENST00000522353 NOTCH4Q99466 2003 aa12.88□□□□□ -0.35
PCDHA3-201ENST00000522353 ANXA2RQ3ZCQ2 193 aa12.88□□□□□ -0.35
PCDHA3-201ENST00000522353 LURAP1LQ8IV03 231 aa12.88□□□□□ -0.35
PCDHA3-201ENST00000522353 Q0VG73 95 aa12.88□□□□□ -0.35
PCDHA3-201ENST00000522353 CGB3P0DN86 165 aa12.88□□□□□ -0.35
PCDHA3-201ENST00000522353 SRSF2Q01130 221 aaKnown RBP12.88□□□□□ -0.35
PCDHA3-201ENST00000522353 TMEM141Q96I45 108 aa12.87□□□□□ -0.35
PCDHA3-201ENST00000522353 IGKV1-39P01597 117 aa12.87□□□□□ -0.35
PCDHA3-201ENST00000522353 IGKV1D-39P04432 117 aa12.87□□□□□ -0.35
PCDHA3-201ENST00000522353 FAM104BQ5XKR9 115 aa12.87□□□□□ -0.35
PCDHA3-201ENST00000522353 THAP8Q8NA92 274 aa12.87□□□□□ -0.35
PCDHA3-201ENST00000522353 C8orf49Q96NF6 230 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 121.7 ms