RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 LGALS1P09382 135 aaKnown RBP6.17□□□□□ -1.42
SCN1A-207ENST00000507401 STAG3L2P0CL84 134 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 STAG3L3P0CL85 134 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 CBLN1P23435 193 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 DUTP33316 252 aaKnown RBP6.17□□□□□ -1.42
SCN1A-207ENST00000507401 HINT1P49773 126 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-207ENST00000507401 CD69Q07108 199 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 CATR1Q13166 79 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 TDRG1Q3Y452 100 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 TIGITQ495A1 244 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 SPANXN5Q5MJ07 72 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 ASPHD1Q5U4P2 390 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 TEX45Q8NA69 505 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 OSR1Q8TAX0 266 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-207ENST00000507401 DDB2Q92466 427 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 ARPC1AQ92747 370 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 GRAMD2BQ96HH9 432 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 AP1S3Q96PC3 154 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 TMEM70Q9BUB7 260 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 SLC25A22Q9H936 323 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 ZNF331Q9NQX6 463 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-207ENST00000507401 WDR83OSQ9Y284 106 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 DNAH9Q9NYC9 4486 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 GRIFINA4D1Z8 144 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 SRRM4A7MD48 611 aaKnown RBP6.16□□□□□ -1.42
SCN1A-207ENST00000507401 OVOL1O14753 267 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 HSBP1O75506 76 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 OR2J3O76001 311 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 APCSP02743 223 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 TRGV3P03979 118 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 SSBP2P81877 361 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-207ENST00000507401 TMEM136Q6ZRR5 245 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 FAM231DQ6ZW35 169 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 HAPLN4Q86UW8 402 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 OR52E5Q8NH55 327 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 OR51H1Q8NH63 302 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 DLX4Q92988 240 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-207ENST00000507401 HARBI1Q96MB7 349 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 FAM103A1Q9BTL3 118 aaKnown RBP6.16□□□□□ -1.42
SCN1A-207ENST00000507401 CCL28Q9NRJ3 127 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 ZNF256Q9Y2P7 627 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-207ENST00000507401 RFNGQ9Y644 331 aa6.16□□□□□ -1.42
SCN1A-207ENST00000507401 SORL1Q92673 2214 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 SMIM27A0A1W2PRY6 76 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 IZUMO1RA6ND01 250 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 GAGE10A6NGK3 116 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 LINC00473A8K010 186 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 H3BP45 60 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 TAX1BP3O14907 124 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 SIVA1O15304 175 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 ZNF207O43670 478 aaKnown RBP6.15□□□□□ -1.42
SCN1A-207ENST00000507401 P0C879 139 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 IGLC1P0CG04 106 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 NPPCP23582 126 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 GNG4P50150 75 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 ARL16Q0P5N6 197 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 MRGPRG-AS1Q2M3A8 158 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 VMA21Q3ZAQ7 101 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 BVES-AS1Q5T3Y7 98 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 ZNF645Q8N7E2 425 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 TSKUQ8WUA8 353 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 C5orf30Q96GV9 206 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 USMG5Q96IX5 58 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 SPANXA1Q9NS26 97 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 HSPB8Q9UJY1 196 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 V9GYV3 84 aa6.15□□□□□ -1.42
SCN1A-207ENST00000507401 TENM3Q9P273 2699 aa6.15□□□□□ -1.43
SCN1A-207ENST00000507401 IGHV4OR15-8A0A075B7B6 117 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 A0A087WW49 117 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 IGKV1D-13A0A0B4J2D9 117 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 KRTAP9-7A8MTY7 169 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 H3BRM9 83 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 IGKV1-5P01602 117 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 IGLV2-14P01704 120 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 OR9G9P0C7N8 305 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 IGKV1-13P0DP09 117 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 IAPPP10997 89 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 FA2HQ7L5A8 372 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 FER1L6-AS1Q8NA97 138 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 OCC1Q8TAD7 63 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 VSTM2AQ8TAG5 236 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 PRR25Q96S07 402 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 HSD17B10Q99714 261 aaKnown RBP6.14□□□□□ -1.43
SCN1A-207ENST00000507401 ZNF355PQ9NSJ1 428 aa6.14□□□□□ -1.43
SCN1A-207ENST00000507401 TNCP24821 2201 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 TMEM189A5PLL7 270 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 FAM231BA6NCW3 169 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 HELTA6NFD8 242 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 PMS2P5A8MQ11 134 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 M0R2Z0 102 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 SAP30O75446 220 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 ACTL6BO94805 426 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 IGHV3-11P01762 117 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 SLURP1P55000 103 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 TAS2R45P59539 299 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 EIF4EBP1Q13541 118 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-207ENST00000507401 CT83Q5H943 113 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 SAMD13Q5VXD3 122 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 PQLC2Q6ZP29 291 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 SPATA12Q7Z6I5 190 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms