RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 CLEC5AQ9NY25 188 aa13.21□□□□□ -0.29
SQSTM1-209ENST00000504627 C9JQL5 133 aa13.2□□□□□ -0.3
SQSTM1-209ENST00000504627 ATP6V1G1O75348 118 aa13.2□□□□□ -0.3
SQSTM1-209ENST00000504627 CA1P00915 261 aaPredicted RBP13.2□□□□□ -0.3
SQSTM1-209ENST00000504627 SUMO1P63165 101 aaKnown RBP13.2□□□□□ -0.3
SQSTM1-209ENST00000504627 TMEM218A2RU14 115 aa13.19□□□□□ -0.3
SQSTM1-209ENST00000504627 SOCS3O14543 225 aa13.19□□□□□ -0.3
SQSTM1-209ENST00000504627 SFTA3P0C7M3 94 aa13.19□□□□□ -0.3
SQSTM1-209ENST00000504627 STHQ8IWL8 128 aa13.19□□□□□ -0.3
SQSTM1-209ENST00000504627 FAM24BQ8N5W8 94 aa13.19□□□□□ -0.3
SQSTM1-209ENST00000504627 ARL6IP6Q8N6S5 226 aa13.19□□□□□ -0.3
SQSTM1-209ENST00000504627 CYB561D1Q8N8Q1 229 aa13.19□□□□□ -0.3
SQSTM1-209ENST00000504627 HIST1H2BAQ96A08 127 aa13.19□□□□□ -0.3
SQSTM1-209ENST00000504627 MRPL53Q96EL3 112 aaKnown RBP13.19□□□□□ -0.3
SQSTM1-209ENST00000504627 PRELID1Q9Y255 219 aa13.19□□□□□ -0.3
SQSTM1-209ENST00000504627 ALMS1Q8TCU4 4167 aa13.18□□□□□ -0.3
SQSTM1-209ENST00000504627 SCO2A0A1W2PP80 73 aa13.18□□□□□ -0.3
SQSTM1-209ENST00000504627 PGPA6NDG6 321 aa13.18□□□□□ -0.3
SQSTM1-209ENST00000504627 KRBOX1C9JBD0 128 aa13.18□□□□□ -0.3
SQSTM1-209ENST00000504627 SLC25A5P05141 298 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-209ENST00000504627 CEMP1Q6PRD7 247 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-209ENST00000504627 EXOC3-AS1Q8N2X6 119 aa13.18□□□□□ -0.3
SQSTM1-209ENST00000504627 CMTM2Q8TAZ6 248 aa13.18□□□□□ -0.3
SQSTM1-209ENST00000504627 RPUSD4Q96CM3 377 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-209ENST00000504627 KLK5Q9Y337 293 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-209ENST00000504627 PEX7O00628 323 aa13.17□□□□□ -0.3
SQSTM1-209ENST00000504627 ISLRO14498 428 aa13.17□□□□□ -0.3
SQSTM1-209ENST00000504627 OR11H2Q8NH07 326 aa13.17□□□□□ -0.3
SQSTM1-209ENST00000504627 C16orf92Q96LL3 132 aa13.17□□□□□ -0.3
SQSTM1-209ENST00000504627 ATG101Q9BSB4 218 aa13.17□□□□□ -0.3
SQSTM1-209ENST00000504627 EPPK1P58107 5090 aaKnown RBP13.17□□□□□ -0.3
SQSTM1-209ENST00000504627 TRAV8-2A0A0B4J237 113 aa13.16□□□□□ -0.3
SQSTM1-209ENST00000504627 SERTM2A0A1B0GWG4 89 aa13.16□□□□□ -0.3
SQSTM1-209ENST00000504627 K7EQG2 157 aa13.16□□□□□ -0.3
SQSTM1-209ENST00000504627 LY6G6CO95867 125 aa13.16□□□□□ -0.3
SQSTM1-209ENST00000504627 ZNF688P0C7X2 276 aa13.16□□□□□ -0.3
SQSTM1-209ENST00000504627 AKR1C3P42330 323 aa13.16□□□□□ -0.3
SQSTM1-209ENST00000504627 CSN1S1P47710 185 aa13.16□□□□□ -0.3
SQSTM1-209ENST00000504627 SOHLH1Q5JUK2 328 aa13.16□□□□□ -0.3
SQSTM1-209ENST00000504627 C2CD4CQ8TF44 421 aa13.16□□□□□ -0.3
SQSTM1-209ENST00000504627 DCANP1Q8TF63 244 aa13.16□□□□□ -0.3
SQSTM1-209ENST00000504627 SEC11CQ9BY50 192 aa13.16□□□□□ -0.3
SQSTM1-209ENST00000504627 EPDR1Q9UM22 224 aa13.16□□□□□ -0.3
SQSTM1-209ENST00000504627 TCRAP04437 139 aa13.15□□□□□ -0.3
SQSTM1-209ENST00000504627 ID1P41134 155 aa13.15□□□□□ -0.3
SQSTM1-209ENST00000504627 LINC00476Q8WZB0 136 aa13.15□□□□□ -0.3
SQSTM1-209ENST00000504627 PARLQ9H300 379 aa13.15□□□□□ -0.3
SQSTM1-209ENST00000504627 M0R3E3 92 aa13.14□□□□□ -0.31
SQSTM1-209ENST00000504627 ADCYAP1P18509 176 aa13.14□□□□□ -0.31
SQSTM1-209ENST00000504627 CNN1P51911 297 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-209ENST00000504627 CEBPGP53567 150 aa13.14□□□□□ -0.31
SQSTM1-209ENST00000504627 GNG5P63218 68 aa13.14□□□□□ -0.31
SQSTM1-209ENST00000504627 FAM74A3Q4VXF1 159 aa13.14□□□□□ -0.31
SQSTM1-209ENST00000504627 PHLDA1Q8WV24 401 aaPredicted RBP13.14□□□□□ -0.31
SQSTM1-209ENST00000504627 CARHSP1Q9Y2V2 147 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-209ENST00000504627 F8W036 122 aa13.13□□□□□ -0.31
SQSTM1-209ENST00000504627 K7EQM0 130 aa13.13□□□□□ -0.31
SQSTM1-209ENST00000504627 S100A1P23297 94 aa13.13□□□□□ -0.31
SQSTM1-209ENST00000504627 C10orf91Q5T1B1 145 aa13.13□□□□□ -0.31
SQSTM1-209ENST00000504627 C11orf45Q8TAV5 145 aa13.13□□□□□ -0.31
SQSTM1-209ENST00000504627 LINC00052Q96N35 136 aa13.13□□□□□ -0.31
SQSTM1-209ENST00000504627 KNCNA6PVL3 124 aa13.12□□□□□ -0.31
SQSTM1-209ENST00000504627 DIRC3C9JPN6 131 aa13.12□□□□□ -0.31
SQSTM1-209ENST00000504627 S100A9P06702 114 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-209ENST00000504627 PSG3Q16557 428 aa13.12□□□□□ -0.31
SQSTM1-209ENST00000504627 PSMG4Q5JS54 123 aa13.12□□□□□ -0.31
SQSTM1-209ENST00000504627 ACTL10Q5JWF8 245 aa13.12□□□□□ -0.31
SQSTM1-209ENST00000504627 TRPT1Q86TN4 253 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-209ENST00000504627 SMIM7Q9BQ49 75 aa13.12□□□□□ -0.31
SQSTM1-209ENST00000504627 C11orf68Q9H3H3 251 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-209ENST00000504627 RPH3ALQ9UNE2 315 aa13.12□□□□□ -0.31
SQSTM1-209ENST00000504627 FBLL1A6NHQ2 334 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 ZNF727A8MUV8 499 aa13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 C9JCJ5 164 aa13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 DEFB4AO15263 64 aa13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 HLA-DMBP28068 263 aa13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 RPL35P42766 123 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 SNRPD3P62318 126 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 TMEM183BQ1AE95 376 aa13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 ZNF674Q2M3X9 581 aa13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 IGFL4Q6B9Z1 124 aa13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 MORN3Q6PF18 240 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 GOLT1AQ6ZVE7 132 aa13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 RNF182Q8N6D2 247 aa13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 TMEM75Q8N9X5 138 aa13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 FMC1Q96HJ9 113 aa13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 DERL1Q9BUN8 251 aa13.11□□□□□ -0.31
SQSTM1-209ENST00000504627 TRBV6-1A0A0K0K1D8 114 aa13.1□□□□□ -0.31
SQSTM1-209ENST00000504627 RBAKDNA6NC62 111 aa13.1□□□□□ -0.31
SQSTM1-209ENST00000504627 TAS2R60P59551 318 aa13.1□□□□□ -0.31
SQSTM1-209ENST00000504627 NANOS2P60321 138 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-209ENST00000504627 UBE2G1P62253 170 aa13.1□□□□□ -0.31
SQSTM1-209ENST00000504627 ZNF738Q8NE65 137 aa13.1□□□□□ -0.31
SQSTM1-209ENST00000504627 C20orf173Q96LM9 149 aa13.1□□□□□ -0.31
SQSTM1-209ENST00000504627 NIPSNAP3BQ9BS92 247 aa13.1□□□□□ -0.31
SQSTM1-209ENST00000504627 KLF12Q9Y4X4 402 aa13.1□□□□□ -0.31
SQSTM1-209ENST00000504627 NAT8Q9UHE5 227 aa13.09□□□□□ -0.31
SQSTM1-209ENST00000504627 PNRC1Q12796 327 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-209ENST00000504627 CENPWQ5EE01 88 aa13.08□□□□□ -0.32
SQSTM1-209ENST00000504627 Q86TA4 180 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 152.1 ms