RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 Q8TCH9 128 aa8.62□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 VCX2Q9H322 139 aa8.62□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 PF4V1P10720 104 aa8.62□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 IGFL4Q6B9Z1 124 aa8.62□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 AMTNQ6UX39 209 aa8.62□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 C11orf44Q8N8P7 122 aa8.62□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 C7orf69Q9H7B7 122 aa8.62□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 TMEM262E9PQX1 116 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 F8W1H4 67 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 HTN1P15515 57 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 LGALS7P47929 136 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 RUSC1-AS1Q66K80 236 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 EPDR1Q9UM22 224 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 IGHV1-3A0A0C4DH29 117 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 BRWD1-AS2P59051 145 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 C2orf83Q53S99 150 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 PSMG4Q5JS54 123 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 FAM168AQ92567 244 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 SMIM27A0A1W2PRY6 76 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 SMIM20Q8N5G0 67 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 KLK15Q9H2R5 256 aa8.61□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 E7EUB6 86 aa8.6□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 VMO1Q7Z5L0 202 aa8.6□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 GTSCR1Q86UQ5 136 aa8.6□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 C11orf52Q96A22 123 aa8.6□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 PPIFP30405 207 aaKnown RBP8.6□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 SSBP2P81877 361 aaPredicted RBP8.6□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 CHAC1Q9BUX1 264 aa8.6□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 HOXA3O43365 443 aaPredicted RBP8.6□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 LCNL1Q6ZST4 164 aa8.6□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 HIGD1AQ9Y241 93 aa8.6□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 K7ERJ3 54 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 PRTN3P24158 256 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 ANXA2RQ3ZCQ2 193 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 A8MWV9 139 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 NPIPB11E5RHQ5 1161 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 COX6B1P14854 86 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 HERVK_113P61574 105 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 PRCDQ00LT1 54 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 GAGE5Q13069 117 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 GAGE6Q13070 117 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 WFDC2Q14508 124 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPI3 338 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 LHBP01229 141 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 GATA4P43694 442 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 IGF2-ASQ6U949 168 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 OR5AN1Q8NGI8 311 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 SCRT2Q9NQ03 307 aa8.59□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 GGTLC3B5MD39 225 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 C19orf84I3L1E1 186 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 M0R3E3 92 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 WT1-ASQ06250 92 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 ZNF256Q9Y2P7 627 aaPredicted RBP8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 TRAV8-1A0A0A6YYK1 113 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 SPATA12Q7Z6I5 190 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 BUB1B-PAK6H3BSN5 160 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 NDUFA3O95167 84 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 FAM106CPP0CH98 169 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 S100A4P26447 101 aaKnown RBP8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 ATP5G2Q06055 141 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 CD69Q07108 199 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 TMEM155Q4W5P6 130 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 ZNF329Q86UD4 541 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 FMC1Q96HJ9 113 aa8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 BEX4Q9NWD9 120 aaPredicted RBP8.58□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 C2orf70A6NJV1 201 aa8.57□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 DPM2O94777 84 aa8.57□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 LEPP41159 167 aa8.57□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 LINC00310P59036 64 aa8.57□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 ZC2HC1BQ5TFG8 222 aa8.57□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 IGKV3-20P01619 116 aa8.57□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 IGKCP01834 107 aa8.57□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 SRD5A1P18405 259 aa8.57□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 IFI27P40305 119 aaPredicted RBP8.57□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 DLX4Q92988 240 aaPredicted RBP8.57□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 D6R8Y8 96 aa8.57□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 CCDC144NLQ6NUI1 221 aa8.57□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 CLEC19AQ6UXS0 136 aa8.57□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 NBR2O15453 112 aa8.56□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.56□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 Q9H3A6 140 aa8.56□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 VDAC2P45880 294 aaPredicted RBP8.56□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 KLF5Q13887 457 aaPredicted RBP8.56□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 EXOC3-AS1Q8N2X6 119 aa8.56□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 NEU4Q8WWR8 484 aaPredicted RBP8.56□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 C1RLQ9NZP8 487 aa8.56□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 G3V318 75 aa8.56□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 CFHR2P36980 270 aa8.56□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 PGPEP1Q9NXJ5 209 aa8.56□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 SIGLEC9Q9Y336 463 aa8.56□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 SMG1Q96Q15 3661 aaKnown RBP8.56□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 HAX1O00165 279 aa8.55□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 ATP5LO75964 103 aa8.55□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 SAA4P35542 130 aa8.55□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 PCP2Q8IVA1 136 aa8.55□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 PIMREGQ9BSJ6 248 aa8.55□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 CRYBG3Q68DQ2 2970 aa8.55□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 RNASE2P10153 161 aaKnown RBP8.55□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 HIST2H2BCQ6DN03 193 aa8.55□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 ZNF295-AS1Q8N0V1 137 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms