RNA–Protein interactions for RNA: ENST00000465563.5

SMC4-205, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 747 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-205ENST00000465563 LINC00299Q6ZSB3 139 aa0.41□□□□□ -2.34
SMC4-205ENST00000465563 XIRP1Q702N8 1843 aaKnown RBP0.41□□□□□ -2.34
SMC4-205ENST00000465563 GABARAPH6UMI1 98 aa0.4□□□□□ -2.35
SMC4-205ENST00000465563 PRH1P02810 166 aa0.4□□□□□ -2.35
SMC4-205ENST00000465563 SPINK9Q5DT21 86 aa0.4□□□□□ -2.35
SMC4-205ENST00000465563 DYDC1Q8WWB3 177 aa0.4□□□□□ -2.35
SMC4-205ENST00000465563 ISOC1Q96CN7 298 aa0.4□□□□□ -2.35
SMC4-205ENST00000465563 OR4C12Q96R67 309 aa0.4□□□□□ -2.35
SMC4-205ENST00000465563 PCBD2Q9H0N5 130 aa0.4□□□□□ -2.35
SMC4-205ENST00000465563 NIT2Q9NQR4 276 aa0.4□□□□□ -2.35
SMC4-205ENST00000465563 TPRKBQ9Y3C4 175 aa0.4□□□□□ -2.35
SMC4-205ENST00000465563 TCOF1Q13428 1488 aaKnown RBP0.4□□□□□ -2.35
SMC4-205ENST00000465563 PBRM1Q86U86 1689 aa0.4□□□□□ -2.35
SMC4-205ENST00000465563 A0A096LPI6 279 aa0.39□□□□□ -2.35
SMC4-205ENST00000465563 MT-ND6P03923 174 aa0.39□□□□□ -2.35
SMC4-205ENST00000465563 BCL2P10415 239 aa0.39□□□□□ -2.35
SMC4-205ENST00000465563 S100A5P33763 92 aa0.39□□□□□ -2.35
SMC4-205ENST00000465563 ANGPTL5Q86XS5 388 aa0.39□□□□□ -2.35
SMC4-205ENST00000465563 EFCAB11Q9BUY7 163 aa0.39□□□□□ -2.35
SMC4-205ENST00000465563 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.38□□□□□ -2.35
SMC4-205ENST00000465563 TNCP24821 2201 aa0.38□□□□□ -2.35
SMC4-205ENST00000465563 TRBV30A0A0K0K1B3 111 aa0.38□□□□□ -2.35
SMC4-205ENST00000465563 ZNF727A8MUV8 499 aa0.38□□□□□ -2.35
SMC4-205ENST00000465563 IGHV3-30P01768 117 aa0.38□□□□□ -2.35
SMC4-205ENST00000465563 IGHV3-30-5P0DP03 117 aa0.38□□□□□ -2.35
SMC4-205ENST00000465563 FABP2P12104 132 aa0.38□□□□□ -2.35
SMC4-205ENST00000465563 S100A11P31949 105 aa0.38□□□□□ -2.35
SMC4-205ENST00000465563 VMA21Q3ZAQ7 101 aa0.38□□□□□ -2.35
SMC4-205ENST00000465563 STX12Q86Y82 276 aa0.38□□□□□ -2.35
SMC4-205ENST00000465563 ESPL1Q14674 2120 aa0.37□□□□□ -2.35
SMC4-205ENST00000465563 KRTAP2-3P0C7H8 128 aa0.37□□□□□ -2.35
SMC4-205ENST00000465563 OR4B1Q8NGF8 309 aa0.37□□□□□ -2.35
SMC4-205ENST00000465563 THEM6Q8WUY1 208 aa0.37□□□□□ -2.35
SMC4-205ENST00000465563 RMND5BQ96G75 393 aaPredicted RBP0.37□□□□□ -2.35
SMC4-205ENST00000465563 KRTAP2-4Q9BYR9 128 aa0.37□□□□□ -2.35
SMC4-205ENST00000465563 KRTAP2-1Q9BYU5 128 aa0.37□□□□□ -2.35
SMC4-205ENST00000465563 ATPIF1Q9UII2 106 aa0.37□□□□□ -2.35
SMC4-205ENST00000465563 FAM135BQ49AJ0 1406 aa0.37□□□□□ -2.35
SMC4-205ENST00000465563 KMT2DO14686 5537 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 TRBV7-6A0A0J9YX20 115 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 TRBV27A0A0K0K1C4 114 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 TRACP01848 142 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 CCL4P13236 92 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 SDC2P34741 201 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 RPL37AP61513 92 aaKnown RBP0.36□□□□□ -2.35
SMC4-205ENST00000465563 HRCT1Q6UXD1 115 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 IZUMO2Q6UXV1 221 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 Q6ZQY7 126 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 CROCCP2Q86T23 111 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 C10orf111Q8N326 155 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 OR5H6Q8NGV6 325 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 CLEC2BQ92478 149 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 PRELID3AQ96N28 172 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 CCL19Q99731 98 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 LPAR5Q9H1C0 372 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 LAMTOR2Q9Y2Q5 125 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 MED31Q9Y3C7 131 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 DLC1Q96QB1 1528 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 LOC285556D6RIA3 1793 aa0.36□□□□□ -2.35
SMC4-205ENST00000465563 SYNE2Q8WXH0 6885 aaKnown RBP0.35□□□□□ -2.35
SMC4-205ENST00000465563 ABCA1O95477 2261 aa0.35□□□□□ -2.35
SMC4-205ENST00000465563 NUPR2A6NF83 97 aa0.35□□□□□ -2.35
SMC4-205ENST00000465563 FABP1P07148 127 aa0.35□□□□□ -2.35
SMC4-205ENST00000465563 POLR2HP52434 150 aaKnown RBP0.35□□□□□ -2.35
SMC4-205ENST00000465563 CASC2Q6XLA1 102 aa0.35□□□□□ -2.35
SMC4-205ENST00000465563 PLAC4Q8WY50 150 aa0.35□□□□□ -2.35
SMC4-205ENST00000465563 SMR3AQ99954 134 aa0.35□□□□□ -2.35
SMC4-205ENST00000465563 NABP2Q9BQ15 211 aa0.35□□□□□ -2.35
SMC4-205ENST00000465563 CCDC32Q9BV29 185 aa0.35□□□□□ -2.35
SMC4-205ENST00000465563 CENPHQ9H3R5 247 aa0.35□□□□□ -2.35
SMC4-205ENST00000465563 BOKQ9UMX3 212 aaPredicted RBP0.35□□□□□ -2.35
SMC4-205ENST00000465563 AFDNP55196 1824 aaKnown RBP0.35□□□□□ -2.35
SMC4-205ENST00000465563 SPAG17Q6Q759 2223 aa0.34□□□□□ -2.35
SMC4-205ENST00000465563 ABCA4P78363 2273 aa0.34□□□□□ -2.35
SMC4-205ENST00000465563 MAXP61244 160 aa0.34□□□□□ -2.36
SMC4-205ENST00000465563 NEDD8Q15843 81 aa0.34□□□□□ -2.36
SMC4-205ENST00000465563 LINC00305Q7Z4B0 112 aa0.34□□□□□ -2.36
SMC4-205ENST00000465563 NAV2Q8IVL1 2488 aa0.34□□□□□ -2.36
SMC4-205ENST00000465563 MORN4Q8NDC4 146 aa0.34□□□□□ -2.36
SMC4-205ENST00000465563 C3orf85A0A1B0GTC6 90 aa0.33□□□□□ -2.36
SMC4-205ENST00000465563 E7EQ34 232 aa0.33□□□□□ -2.36
SMC4-205ENST00000465563 SAA1P0DJI8 122 aaPredicted RBP0.33□□□□□ -2.36
SMC4-205ENST00000465563 RPL7P18124 248 aaKnown RBP0.33□□□□□ -2.36
SMC4-205ENST00000465563 NDUFA6P56556 154 aa0.33□□□□□ -2.36
SMC4-205ENST00000465563 C10orf99Q6UWK7 81 aa0.33□□□□□ -2.36
SMC4-205ENST00000465563 DEFB132Q7Z7B7 95 aa0.33□□□□□ -2.36
SMC4-205ENST00000465563 OR5AK2Q8NH90 309 aa0.33□□□□□ -2.36
SMC4-205ENST00000465563 CIB3Q96Q77 187 aaPredicted RBP0.33□□□□□ -2.36
SMC4-205ENST00000465563 FAM103A1Q9BTL3 118 aaKnown RBP0.33□□□□□ -2.36
SMC4-205ENST00000465563 FKBP11Q9NYL4 201 aa0.33□□□□□ -2.36
SMC4-205ENST00000465563 WDR97A6NE52 1622 aa0.33□□□□□ -2.36
SMC4-205ENST00000465563 KCPQ6ZWJ8 1503 aa0.33□□□□□ -2.36
SMC4-205ENST00000465563 BCORL1Q5H9F3 1711 aa0.33□□□□□ -2.36
SMC4-205ENST00000465563 HELZP42694 1942 aaKnown RBP0.32□□□□□ -2.36
SMC4-205ENST00000465563 MED13LQ71F56 2210 aa0.32□□□□□ -2.36
SMC4-205ENST00000465563 TRAV13-1A0A0B4J241 112 aa0.32□□□□□ -2.36
SMC4-205ENST00000465563 TPT1P13693 172 aaKnown RBP0.32□□□□□ -2.36
SMC4-205ENST00000465563 ZNF137PP52743 207 aa0.32□□□□□ -2.36
SMC4-205ENST00000465563 TFAMQ00059 246 aaKnown RBP0.32□□□□□ -2.36
SMC4-205ENST00000465563 CSAG1Q6PB30 78 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms