RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 EPPK1P58107 5090 aaKnown RBP16.29■□□□□ 0.2
PTPN4-208ENST00000460289 VPS13DQ5THJ4 4388 aa16.28■□□□□ 0.2
PTPN4-208ENST00000460289 A0A1W2PPV4 95 aa16.28■□□□□ 0.2
PTPN4-208ENST00000460289 NMBP08949 121 aa16.28■□□□□ 0.2
PTPN4-208ENST00000460289 CSN1S1P47710 185 aa16.28■□□□□ 0.2
PTPN4-208ENST00000460289 RANP62826 216 aaKnown RBP16.28■□□□□ 0.2
PTPN4-208ENST00000460289 UBE2L3P68036 154 aaKnown RBP16.28■□□□□ 0.2
PTPN4-208ENST00000460289 ZNF503Q96F45 646 aa16.28■□□□□ 0.2
PTPN4-208ENST00000460289 PHYHIPLQ96FC7 376 aa16.28■□□□□ 0.2
PTPN4-208ENST00000460289 FAM19A4Q96LR4 140 aa16.28■□□□□ 0.2
PTPN4-208ENST00000460289 PYGO2Q9BRQ0 406 aa16.28■□□□□ 0.2
PTPN4-208ENST00000460289 CBY3A6NI87 242 aa16.27■□□□□ 0.2
PTPN4-208ENST00000460289 C7orf71A4D174 169 aa16.26■□□□□ 0.19
PTPN4-208ENST00000460289 KLLNB2CW77 178 aa16.26■□□□□ 0.19
PTPN4-208ENST00000460289 GPX1P07203 203 aa16.26■□□□□ 0.19
PTPN4-208ENST00000460289 POM121L12Q8N7R1 296 aa16.26■□□□□ 0.19
PTPN4-208ENST00000460289 NOP10Q9NPE3 64 aaKnown RBP16.26■□□□□ 0.19
PTPN4-208ENST00000460289 IGKV2-40A0A087WW87 121 aaPredicted RBP16.25■□□□□ 0.19
PTPN4-208ENST00000460289 IGKV2D-40P01614 121 aaPredicted RBP16.25■□□□□ 0.19
PTPN4-208ENST00000460289 ATP5G1P05496 136 aa16.25■□□□□ 0.19
PTPN4-208ENST00000460289 CRISP2P16562 243 aa16.25■□□□□ 0.19
PTPN4-208ENST00000460289 ATP5G3P48201 142 aa16.25■□□□□ 0.19
PTPN4-208ENST00000460289 TMEM88Q6PEY1 159 aa16.25■□□□□ 0.19
PTPN4-208ENST00000460289 PQLC2Q6ZP29 291 aa16.25■□□□□ 0.19
PTPN4-208ENST00000460289 INO80EQ8NBZ0 244 aaPredicted RBP16.25■□□□□ 0.19
PTPN4-208ENST00000460289 VGLL1Q99990 258 aa16.25■□□□□ 0.19
PTPN4-208ENST00000460289 Q9H3A6 140 aa16.25■□□□□ 0.19
PTPN4-208ENST00000460289 ZNF492Q9P255 531 aa16.25■□□□□ 0.19
PTPN4-208ENST00000460289 SNURFLB1AK76 121 aa16.24■□□□□ 0.19
PTPN4-208ENST00000460289 RNASE4P34096 147 aaKnown RBP16.24■□□□□ 0.19
PTPN4-208ENST00000460289 Q5BKY6 102 aa16.24■□□□□ 0.19
PTPN4-208ENST00000460289 OR10G4Q8NGN3 311 aa16.24■□□□□ 0.19
PTPN4-208ENST00000460289 OR10G9Q8NGN4 311 aa16.24■□□□□ 0.19
PTPN4-208ENST00000460289 OR10G7Q8NGN6 311 aa16.24■□□□□ 0.19
PTPN4-208ENST00000460289 RXFP4Q8TDU9 374 aa16.24■□□□□ 0.19
PTPN4-208ENST00000460289 TRBV7-9A0A0J9YWB2 115 aa16.23■□□□□ 0.19
PTPN4-208ENST00000460289 RBAKDNA6NC62 111 aa16.23■□□□□ 0.19
PTPN4-208ENST00000460289 ZNF324O75467 553 aaPredicted RBP16.23■□□□□ 0.19
PTPN4-208ENST00000460289 ZNF138P52744 262 aa16.23■□□□□ 0.19
PTPN4-208ENST00000460289 RAB2AP61019 212 aa16.23■□□□□ 0.19
PTPN4-208ENST00000460289 C15orf53Q8NAA6 179 aa16.23■□□□□ 0.19
PTPN4-208ENST00000460289 HSD17B11Q8NBQ5 300 aa16.23■□□□□ 0.19
PTPN4-208ENST00000460289 OR2G3Q8NGZ4 309 aa16.23■□□□□ 0.19
PTPN4-208ENST00000460289 PSMG3Q9BT73 122 aaPredicted RBP16.23■□□□□ 0.19
PTPN4-208ENST00000460289 F5H768 121 aa16.22■□□□□ 0.19
PTPN4-208ENST00000460289 CD300CQ08708 224 aa16.22■□□□□ 0.19
PTPN4-208ENST00000460289 FAM74A1Q5RGS3 127 aa16.22■□□□□ 0.19
PTPN4-208ENST00000460289 LINC00467Q9BRT7 94 aa16.22■□□□□ 0.19
PTPN4-208ENST00000460289 SERF2P84101 59 aa16.21■□□□□ 0.19
PTPN4-208ENST00000460289 BTN1A1Q13410 526 aa16.21■□□□□ 0.19
PTPN4-208ENST00000460289 UBE2DNLQ8IWF7 75 aa16.21■□□□□ 0.19
PTPN4-208ENST00000460289 ZNF680Q8NEM1 530 aa16.21■□□□□ 0.19
PTPN4-208ENST00000460289 OTORQ9NRC9 128 aa16.21■□□□□ 0.19
PTPN4-208ENST00000460289 MBP02144 154 aa16.2■□□□□ 0.18
PTPN4-208ENST00000460289 ATP6V0CP27449 155 aa16.2■□□□□ 0.18
PTPN4-208ENST00000460289 RNF212Q495C1 297 aa16.2■□□□□ 0.18
PTPN4-208ENST00000460289 EIF4E3Q8N5X7 224 aaKnown RBP16.2■□□□□ 0.18
PTPN4-208ENST00000460289 ZFAND2AQ8N6M9 145 aa16.2■□□□□ 0.18
PTPN4-208ENST00000460289 OR2T35Q8NGX2 323 aa16.2■□□□□ 0.18
PTPN4-208ENST00000460289 CMTM2Q8TAZ6 248 aa16.2■□□□□ 0.18
PTPN4-208ENST00000460289 FXYD6-FXYD2A0A087WZ82 144 aa16.19■□□□□ 0.18
PTPN4-208ENST00000460289 PGPA6NDG6 321 aa16.19■□□□□ 0.18
PTPN4-208ENST00000460289 DIRC3C9JPN6 131 aa16.19■□□□□ 0.18
PTPN4-208ENST00000460289 EIF3GO75821 320 aaKnown RBP eCLIP16.19■□□□□ 0.18
PTPN4-208ENST00000460289 DAZ2Q13117 558 aaKnown RBP16.19■□□□□ 0.18
PTPN4-208ENST00000460289 ANXA2RQ3ZCQ2 193 aa16.19■□□□□ 0.18
PTPN4-208ENST00000460289 LINC00612Q8N6U2 182 aa16.19■□□□□ 0.18
PTPN4-208ENST00000460289 HYLS1Q96M11 299 aa16.19■□□□□ 0.18
PTPN4-208ENST00000460289 CDC34P49427 236 aaPredicted RBP16.18■□□□□ 0.18
PTPN4-208ENST00000460289 ARL6IP6Q8N6S5 226 aa16.18■□□□□ 0.18
PTPN4-208ENST00000460289 TNFSF18Q9UNG2 199 aa16.18■□□□□ 0.18
PTPN4-208ENST00000460289 BORCS7-ASMTA0A0B4J1R7 106 aa16.17■□□□□ 0.18
PTPN4-208ENST00000460289 RGS13O14921 159 aa16.17■□□□□ 0.18
PTPN4-208ENST00000460289 Q8TAT8 98 aa16.17■□□□□ 0.18
PTPN4-208ENST00000460289 TMED6Q8WW62 240 aa16.17■□□□□ 0.18
PTPN4-208ENST00000460289 GNPNAT1Q96EK6 184 aaPredicted RBP16.17■□□□□ 0.18
PTPN4-208ENST00000460289 LENEPQ9Y5L5 61 aa16.17■□□□□ 0.18
PTPN4-208ENST00000460289 GAGE12BA1L429 117 aa16.16■□□□□ 0.18
PTPN4-208ENST00000460289 RNF222A6NCQ9 220 aa16.16■□□□□ 0.18
PTPN4-208ENST00000460289 HMGB3O15347 200 aaKnown RBP16.16■□□□□ 0.18
PTPN4-208ENST00000460289 GAGE7O76087 117 aa16.16■□□□□ 0.18
PTPN4-208ENST00000460289 GAGE12FP0CL80 117 aa16.16■□□□□ 0.18
PTPN4-208ENST00000460289 GAGE12GP0CL81 117 aa16.16■□□□□ 0.18
PTPN4-208ENST00000460289 GAGE12IP0CL82 117 aa16.16■□□□□ 0.18
PTPN4-208ENST00000460289 STAG3L2P0CL84 134 aa16.16■□□□□ 0.18
PTPN4-208ENST00000460289 STAG3L3P0CL85 134 aa16.16■□□□□ 0.18
PTPN4-208ENST00000460289 PRR9Q5T870 116 aa16.16■□□□□ 0.18
PTPN4-208ENST00000460289 RAB24Q969Q5 203 aa16.16■□□□□ 0.18
PTPN4-208ENST00000460289 GSN-AS1Q9NRJ2 163 aa16.16■□□□□ 0.18
PTPN4-208ENST00000460289 IGHV1OR15-1A0A075B7D0 117 aa16.15■□□□□ 0.18
PTPN4-208ENST00000460289 ARL14EPLP0DKL9 152 aa16.15■□□□□ 0.18
PTPN4-208ENST00000460289 C11orf72Q8NBR9 251 aa16.15■□□□□ 0.18
PTPN4-208ENST00000460289 BIRC6Q9NR09 4857 aa16.15■□□□□ 0.18
PTPN4-208ENST00000460289 IBA57Q5T440 356 aaKnown RBP16.14■□□□□ 0.17
PTPN4-208ENST00000460289 RPL7L1Q6DKI1 246 aaKnown RBP16.14■□□□□ 0.17
PTPN4-208ENST00000460289 DNAH6Q9C0G6 4158 aa16.13■□□□□ 0.17
PTPN4-208ENST00000460289 NUDT3O95989 172 aa16.13■□□□□ 0.17
PTPN4-208ENST00000460289 FAM3BP58499 235 aaPredicted RBP16.13■□□□□ 0.17
PTPN4-208ENST00000460289 OR5I1Q13606 314 aa16.13■□□□□ 0.17
PTPN4-208ENST00000460289 Q6ZTI0 123 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms