RNA–Protein interactions for RNA: ENST00000396521.3

EXOSC3-202, Transcript of exosome component 3, humanhuman

TSL 2 BASIC

Gene EXOSC3, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-202ENST00000396521 NXPH4O95158 308 aa11.98□□□□□ -0.49
EXOSC3-202ENST00000396521 EIF4E3Q8N5X7 224 aaKnown RBP11.98□□□□□ -0.49
EXOSC3-202ENST00000396521 TMEM37Q8WXS4 190 aa11.98□□□□□ -0.49
EXOSC3-202ENST00000396521 LINC00477Q96M19 166 aa11.98□□□□□ -0.49
EXOSC3-202ENST00000396521 PARD6GQ9BYG4 376 aaPredicted RBP11.98□□□□□ -0.49
EXOSC3-202ENST00000396521 ALG5Q9Y673 324 aa11.98□□□□□ -0.49
EXOSC3-202ENST00000396521 TRGV1A0A0A0MS02 117 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 C7orf66A4D0T2 115 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 C7orf71A4D174 169 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 SLC17A3O00476 420 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 PAX4O43316 350 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 NMBP08949 121 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 S100A10P60903 97 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 OPCMLQ14982 345 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 IBA57Q5T440 356 aaKnown RBP11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 Q5VSD8 79 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 OR1L4Q8NGR5 311 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 ST6GAL2Q96JF0 529 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 C2orf50Q96LR7 162 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 PFDN5Q99471 154 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 GSN-AS1Q9NRJ2 163 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 PRO0255Q9UI72 69 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 PRELID1Q9Y255 219 aa11.97□□□□□ -0.49
EXOSC3-202ENST00000396521 H3BQ15 152 aa11.96□□□□□ -0.49
EXOSC3-202ENST00000396521 J3KRW8 73 aa11.96□□□□□ -0.49
EXOSC3-202ENST00000396521 CCNKO75909 580 aa11.96□□□□□ -0.49
EXOSC3-202ENST00000396521 MRPL23Q16540 153 aaKnown RBP11.96□□□□□ -0.49
EXOSC3-202ENST00000396521 C11orf72Q8NBR9 251 aa11.96□□□□□ -0.49
EXOSC3-202ENST00000396521 KLLNB2CW77 178 aa11.95□□□□□ -0.5
EXOSC3-202ENST00000396521 SPINK4O60575 86 aa11.95□□□□□ -0.5
EXOSC3-202ENST00000396521 SNRPCP09234 159 aaKnown RBP11.95□□□□□ -0.5
EXOSC3-202ENST00000396521 PRB4P10163 310 aaPredicted RBP11.95□□□□□ -0.5
EXOSC3-202ENST00000396521 CAMLGP49069 296 aa11.95□□□□□ -0.5
EXOSC3-202ENST00000396521 TCL1AP56279 114 aa11.95□□□□□ -0.5
EXOSC3-202ENST00000396521 LSM5Q9Y4Y9 91 aaKnown RBP11.95□□□□□ -0.5
EXOSC3-202ENST00000396521 A0A087WTM6 91 aa11.94□□□□□ -0.5
EXOSC3-202ENST00000396521 L7N2F9 121 aa11.94□□□□□ -0.5
EXOSC3-202ENST00000396521 MPDU1O75352 247 aa11.94□□□□□ -0.5
EXOSC3-202ENST00000396521 VAMP2P63027 116 aa11.94□□□□□ -0.5
EXOSC3-202ENST00000396521 PDE6HQ13956 83 aa11.94□□□□□ -0.5
EXOSC3-202ENST00000396521 MGST2Q99735 147 aa11.94□□□□□ -0.5
EXOSC3-202ENST00000396521 HHLA3Q9XRX5 114 aa11.94□□□□□ -0.5
EXOSC3-202ENST00000396521 RCL1Q9Y2P8 373 aaKnown RBP11.94□□□□□ -0.5
EXOSC3-202ENST00000396521 LY96Q9Y6Y9 160 aa11.94□□□□□ -0.5
EXOSC3-202ENST00000396521 FAM229AH3BQW9 127 aa11.93□□□□□ -0.5
EXOSC3-202ENST00000396521 H3BTX0 84 aa11.93□□□□□ -0.5
EXOSC3-202ENST00000396521 SIX6O95475 246 aa11.93□□□□□ -0.5
EXOSC3-202ENST00000396521 MBPP02686 304 aaPredicted RBP11.93□□□□□ -0.5
EXOSC3-202ENST00000396521 PVALBP20472 110 aaPredicted RBP11.93□□□□□ -0.5
EXOSC3-202ENST00000396521 ICAM4Q14773 271 aa11.93□□□□□ -0.5
EXOSC3-202ENST00000396521 LYPD5Q6UWN5 251 aa11.93□□□□□ -0.5
EXOSC3-202ENST00000396521 NEGR1Q7Z3B1 354 aa11.93□□□□□ -0.5
EXOSC3-202ENST00000396521 VGLL1Q99990 258 aa11.93□□□□□ -0.5
EXOSC3-202ENST00000396521 MED28Q9H204 178 aa11.93□□□□□ -0.5
EXOSC3-202ENST00000396521 CRISP2P16562 243 aa11.92□□□□□ -0.5
EXOSC3-202ENST00000396521 EVI2AP22794 236 aa11.92□□□□□ -0.5
EXOSC3-202ENST00000396521 ARL16Q0P5N6 197 aa11.92□□□□□ -0.5
EXOSC3-202ENST00000396521 MORN5Q5VZ52 161 aa11.92□□□□□ -0.5
EXOSC3-202ENST00000396521 FAM19A4Q96LR4 140 aa11.92□□□□□ -0.5
EXOSC3-202ENST00000396521 TMEM14CQ9P0S9 112 aa11.92□□□□□ -0.5
EXOSC3-202ENST00000396521 TRBV19A0A075B6N1 114 aa11.91□□□□□ -0.5
EXOSC3-202ENST00000396521 GPX1P07203 203 aa11.91□□□□□ -0.5
EXOSC3-202ENST00000396521 HIST1H1EP10412 219 aaKnown RBP11.91□□□□□ -0.5
EXOSC3-202ENST00000396521 GCSHP23434 173 aa11.91□□□□□ -0.5
EXOSC3-202ENST00000396521 RNASE4P34096 147 aaKnown RBP11.91□□□□□ -0.5
EXOSC3-202ENST00000396521 RPL29P47914 159 aaKnown RBP11.91□□□□□ -0.5
EXOSC3-202ENST00000396521 CRYBA4P53673 196 aa11.91□□□□□ -0.5
EXOSC3-202ENST00000396521 CYCSP99999 105 aaKnown RBP11.91□□□□□ -0.5
EXOSC3-202ENST00000396521 LRRC37A5PQ49AS3 106 aa11.91□□□□□ -0.5
EXOSC3-202ENST00000396521 C9orf47Q6ZRZ4 202 aa11.91□□□□□ -0.5
EXOSC3-202ENST00000396521 NMES1Q9C002 83 aa11.91□□□□□ -0.5
EXOSC3-202ENST00000396521 MSRB1Q9NZV6 116 aa11.91□□□□□ -0.5
EXOSC3-202ENST00000396521 KLF12Q9Y4X4 402 aa11.91□□□□□ -0.5
EXOSC3-202ENST00000396521 SRRM2Q9UQ35 2752 aaKnown RBP11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 RGS13O14921 159 aa11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 PET100P0DJ07 73 aa11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 BCAP31P51572 246 aa11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 CAV2P51636 162 aa11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 KRTAP10-1P60331 282 aa11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 RAB32Q13637 225 aa11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 IQCF2Q8IXL9 164 aa11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 C10orf126Q8N4M7 172 aa11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 CHAC2Q8WUX2 184 aa11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 MRPL32Q9BYC8 188 aaKnown RBP11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 AAMDCQ9H7C9 122 aa11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 BOLA1Q9Y3E2 137 aa11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 TIMM9Q9Y5J7 89 aa11.9□□□□□ -0.5
EXOSC3-202ENST00000396521 FAT1Q14517 4588 aa11.89□□□□□ -0.51
EXOSC3-202ENST00000396521 TRBV7-9A0A0J9YWB2 115 aa11.89□□□□□ -0.51
EXOSC3-202ENST00000396521 H2BFSP57053 126 aa11.89□□□□□ -0.51
EXOSC3-202ENST00000396521 CD300CQ08708 224 aa11.89□□□□□ -0.51
EXOSC3-202ENST00000396521 TMEM78Q5T7P6 136 aa11.89□□□□□ -0.51
EXOSC3-202ENST00000396521 ARPC5LQ9BPX5 153 aa11.89□□□□□ -0.51
EXOSC3-202ENST00000396521 AGPAT4-IT1Q9H0P7 198 aa11.89□□□□□ -0.51
EXOSC3-202ENST00000396521 UQCC1Q9NVA1 299 aa11.89□□□□□ -0.51
EXOSC3-202ENST00000396521 IGHV1OR15-1A0A075B7D0 117 aa11.88□□□□□ -0.51
EXOSC3-202ENST00000396521 TRAV5A0A0B4J249 113 aa11.88□□□□□ -0.51
EXOSC3-202ENST00000396521 M0R3E3 92 aa11.88□□□□□ -0.51
EXOSC3-202ENST00000396521 ORM1P02763 201 aa11.88□□□□□ -0.51
EXOSC3-202ENST00000396521 DNAH10OSP0CZ25 163 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms