RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 PRR25Q96S07 402 aa14.4□□□□□ -0.1
CCDC3-201ENST00000378825 NPFFR1Q9GZQ6 430 aa14.4□□□□□ -0.1
CCDC3-201ENST00000378825 AAMDCQ9H7C9 122 aa14.4□□□□□ -0.1
CCDC3-201ENST00000378825 JKAMPQ9P055 326 aa14.4□□□□□ -0.1
CCDC3-201ENST00000378825 RALYQ9UKM9 306 aaKnown RBP14.4□□□□□ -0.1
CCDC3-201ENST00000378825 SHISA9B4DS77 424 aa14.39□□□□□ -0.11
CCDC3-201ENST00000378825 F8W735 103 aaPredicted RBP14.39□□□□□ -0.11
CCDC3-201ENST00000378825 LY6HO94772 140 aa14.39□□□□□ -0.11
CCDC3-201ENST00000378825 LYPD1Q8N2G4 141 aa14.39□□□□□ -0.11
CCDC3-201ENST00000378825 RNF185Q96GF1 192 aa14.39□□□□□ -0.11
CCDC3-201ENST00000378825 LEPP41159 167 aa14.38□□□□□ -0.11
CCDC3-201ENST00000378825 IGHG4P01861 327 aa14.38□□□□□ -0.11
CCDC3-201ENST00000378825 HHLA3Q9XRX5 114 aa14.38□□□□□ -0.11
CCDC3-201ENST00000378825 PPIAL4CA0A0B4J2A2 164 aa14.37□□□□□ -0.11
CCDC3-201ENST00000378825 PPIAL4GP0DN37 164 aa14.37□□□□□ -0.11
CCDC3-201ENST00000378825 ERCC8Q13216 396 aa14.37□□□□□ -0.11
CCDC3-201ENST00000378825 KLRD1Q13241 179 aa14.37□□□□□ -0.11
CCDC3-201ENST00000378825 GTSCR1Q86UQ5 136 aa14.37□□□□□ -0.11
CCDC3-201ENST00000378825 OR4X2Q8NGF9 303 aa14.37□□□□□ -0.11
CCDC3-201ENST00000378825 LINC01560Q8TB33 94 aa14.37□□□□□ -0.11
CCDC3-201ENST00000378825 FANCD2OSQ96PS1 177 aa14.37□□□□□ -0.11
CCDC3-201ENST00000378825 ORM1P02763 201 aa14.37□□□□□ -0.11
CCDC3-201ENST00000378825 GRNP28799 593 aaKnown RBP14.37□□□□□ -0.11
CCDC3-201ENST00000378825 RPL24P83731 157 aaKnown RBP14.37□□□□□ -0.11
CCDC3-201ENST00000378825 SAMD5Q5TGI4 173 aa14.37□□□□□ -0.11
CCDC3-201ENST00000378825 ZNF562Q6V9R5 426 aa14.37□□□□□ -0.11
CCDC3-201ENST00000378825 ONECUT1Q9UBC0 465 aa14.37□□□□□ -0.11
CCDC3-201ENST00000378825 NBL1P41271 181 aa14.36□□□□□ -0.11
CCDC3-201ENST00000378825 NDPQ00604 133 aa14.36□□□□□ -0.11
CCDC3-201ENST00000378825 ODF1Q14990 250 aa14.36□□□□□ -0.11
CCDC3-201ENST00000378825 TEX48A0A1B0GUV7 120 aa14.36□□□□□ -0.11
CCDC3-201ENST00000378825 SMAD5-AS1Q9Y6J3 95 aa14.36□□□□□ -0.11
CCDC3-201ENST00000378825 COL6A6A6NMZ7 2263 aa14.35□□□□□ -0.11
CCDC3-201ENST00000378825 PRAC2D3DTV9 90 aa14.35□□□□□ -0.11
CCDC3-201ENST00000378825 PRSS1P07477 247 aa14.35□□□□□ -0.11
CCDC3-201ENST00000378825 IGLC6P0CF74 106 aa14.35□□□□□ -0.11
CCDC3-201ENST00000378825 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.35□□□□□ -0.11
CCDC3-201ENST00000378825 LY6LH3BQJ8 138 aa14.35□□□□□ -0.11
CCDC3-201ENST00000378825 HES1Q14469 280 aa14.35□□□□□ -0.11
CCDC3-201ENST00000378825 TNFRSF14Q92956 283 aa14.35□□□□□ -0.11
CCDC3-201ENST00000378825 HRNRQ86YZ3 2850 aaPredicted RBP14.34□□□□□ -0.11
CCDC3-201ENST00000378825 FAM90A27PA6NNH2 459 aa14.34□□□□□ -0.11
CCDC3-201ENST00000378825 SIVA1O15304 175 aa14.34□□□□□ -0.11
CCDC3-201ENST00000378825 CELSR1Q9NYQ6 3014 aa14.34□□□□□ -0.11
CCDC3-201ENST00000378825 FABP2P12104 132 aa14.34□□□□□ -0.11
CCDC3-201ENST00000378825 Q6ZQT7 251 aa14.34□□□□□ -0.11
CCDC3-201ENST00000378825 PSMG3-AS1Q96PY0 264 aa14.34□□□□□ -0.11
CCDC3-201ENST00000378825 FOXC2Q99958 501 aa14.34□□□□□ -0.11
CCDC3-201ENST00000378825 CHAC1Q9BUX1 264 aa14.34□□□□□ -0.11
CCDC3-201ENST00000378825 NHP2Q9NX24 153 aaKnown RBP14.34□□□□□ -0.11
CCDC3-201ENST00000378825 VSTM5A8MXK1 200 aa14.33□□□□□ -0.12
CCDC3-201ENST00000378825 MTURNQ8N3F0 131 aa14.33□□□□□ -0.12
CCDC3-201ENST00000378825 RNF182Q8N6D2 247 aa14.33□□□□□ -0.12
CCDC3-201ENST00000378825 NBR2O15453 112 aa14.33□□□□□ -0.12
CCDC3-201ENST00000378825 TNFRSF6BO95407 300 aa14.33□□□□□ -0.12
CCDC3-201ENST00000378825 SMIM13P0DJ93 91 aa14.33□□□□□ -0.12
CCDC3-201ENST00000378825 TMEM158Q8WZ71 300 aa14.33□□□□□ -0.12
CCDC3-201ENST00000378825 COL25A1Q9BXS0 654 aaPredicted RBP14.33□□□□□ -0.12
CCDC3-201ENST00000378825 SPTBN4Q9H254 2564 aa14.33□□□□□ -0.12
CCDC3-201ENST00000378825 TRBV25-1A0A075B6N4 114 aa14.32□□□□□ -0.12
CCDC3-201ENST00000378825 IGHV3OR16-13A0A075B7E8 117 aa14.32□□□□□ -0.12
CCDC3-201ENST00000378825 IGHV3-74A0A0B4J1X5 117 aa14.32□□□□□ -0.12
CCDC3-201ENST00000378825 IGHV3-66A0A0C4DH42 116 aa14.32□□□□□ -0.12
CCDC3-201ENST00000378825 DYNAPQ8N1N2 210 aa14.32□□□□□ -0.12
CCDC3-201ENST00000378825 MAP1LC3AQ9H492 121 aa14.32□□□□□ -0.12
CCDC3-201ENST00000378825 SPTBN1Q01082 2364 aaKnown RBP14.32□□□□□ -0.12
CCDC3-201ENST00000378825 TRAV26-2A0A0B4J265 109 aa14.32□□□□□ -0.12
CCDC3-201ENST00000378825 TRGV3P03979 118 aa14.32□□□□□ -0.12
CCDC3-201ENST00000378825 PDE6HQ13956 83 aa14.32□□□□□ -0.12
CCDC3-201ENST00000378825 ZC2HC1BQ5TFG8 222 aa14.32□□□□□ -0.12
CCDC3-201ENST00000378825 MAPKAPK5-AS1Q8N8E1 139 aa14.32□□□□□ -0.12
CCDC3-201ENST00000378825 PHLDA1Q8WV24 401 aaPredicted RBP14.31□□□□□ -0.12
CCDC3-201ENST00000378825 IGLV11-55A0A075B6I3 123 aa14.31□□□□□ -0.12
CCDC3-201ENST00000378825 TMEM160Q9NX00 188 aa14.31□□□□□ -0.12
CCDC3-201ENST00000378825 TRAV40A0A0B4J280 105 aa14.3□□□□□ -0.12
CCDC3-201ENST00000378825 TMEM8BA6NDV4 472 aa14.3□□□□□ -0.12
CCDC3-201ENST00000378825 CFHR4Q92496 578 aa14.3□□□□□ -0.12
CCDC3-201ENST00000378825 CD3EP07766 207 aa14.3□□□□□ -0.12
CCDC3-201ENST00000378825 MFAP4P55083 255 aa14.3□□□□□ -0.12
CCDC3-201ENST00000378825 OR5A1Q8NGJ0 315 aa14.3□□□□□ -0.12
CCDC3-201ENST00000378825 C11orf21Q9P2W6 132 aa14.3□□□□□ -0.12
CCDC3-201ENST00000378825 CHD8Q9HCK8 2581 aa14.3□□□□□ -0.12
CCDC3-201ENST00000378825 FCER1GP30273 86 aa14.29□□□□□ -0.12
CCDC3-201ENST00000378825 ZMAT4Q9H898 229 aa14.29□□□□□ -0.12
CCDC3-201ENST00000378825 C21orf62Q9NYP8 219 aa14.29□□□□□ -0.12
CCDC3-201ENST00000378825 K7ENP7 123 aa14.29□□□□□ -0.12
CCDC3-201ENST00000378825 IGKCP01834 107 aa14.29□□□□□ -0.12
CCDC3-201ENST00000378825 IL17RELQ6ZVW7 336 aa14.29□□□□□ -0.12
CCDC3-201ENST00000378825 DTX2Q86UW9 622 aa14.29□□□□□ -0.12
CCDC3-201ENST00000378825 GTSF1LQ9H1H1 148 aa14.29□□□□□ -0.12
CCDC3-201ENST00000378825 WFDC2Q14508 124 aa14.28□□□□□ -0.12
CCDC3-201ENST00000378825 MRPL35Q9NZE8 188 aaKnown RBP14.28□□□□□ -0.12
CCDC3-201ENST00000378825 NCBP2LA6PVI3 153 aaKnown RBP14.28□□□□□ -0.12
CCDC3-201ENST00000378825 SPRY2O43597 315 aa14.28□□□□□ -0.12
CCDC3-201ENST00000378825 CDSNQ15517 529 aa14.28□□□□□ -0.12
CCDC3-201ENST00000378825 AMTNQ6UX39 209 aa14.28□□□□□ -0.12
CCDC3-201ENST00000378825 AKAP6Q13023 2319 aa14.28□□□□□ -0.12
CCDC3-201ENST00000378825 CTSGP08311 255 aa14.28□□□□□ -0.12
CCDC3-201ENST00000378825 LCNL1Q6ZST4 164 aa14.28□□□□□ -0.12
CCDC3-201ENST00000378825 RAB1BQ9H0U4 201 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms