RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 MDFICQ9P1T7 246 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 LRRC37A2A6NM11 1700 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 Q6ZR03 302 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 DOCK4Q8N1I0 1966 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 GCSAMLQ5JQS6 135 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 ZNF646O15015 1829 aaPredicted RBP3.89□□□□□ -1.79
PCDH9-201ENST00000377861 LINC01356Q8N9X3 169 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 TRAV8-2A0A0B4J237 113 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 IGHV1-58A0A0C4DH39 117 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 H3BUX3 64 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 ZNF876PQ49A33 203 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 RHPN1-AS1Q9BWJ2 59 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 A0A0B4J2C4 111 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 TRAV26-2A0A0B4J265 109 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 RNASE4P34096 147 aaKnown RBP3.89□□□□□ -1.79
PCDH9-201ENST00000377861 DMRTC1Q5HYR2 192 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 SPAG8Q99932 426 aaPredicted RBP3.88□□□□□ -1.79
PCDH9-201ENST00000377861 SOCS3O14543 225 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 PRR30Q53SZ7 412 aaPredicted RBP3.88□□□□□ -1.79
PCDH9-201ENST00000377861 VSIG2Q96IQ7 327 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 LINC00467Q9BRT7 94 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 SIP14410 1827 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 PLAUP00749 431 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 DAND5Q8N907 189 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 DICER1Q9UPY3 1922 aaKnown RBP3.88□□□□□ -1.79
PCDH9-201ENST00000377861 ECM29Q5VYK3 1845 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 TAF1LQ8IZX4 1826 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 CRIP3Q6Q6R5 217 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 HIST2H2BCQ6DN03 193 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 HIST2H2BDQ6DRA6 164 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 C1orf159Q96HA4 380 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 COX7A1P24310 79 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 TRIOBPQ9H2D6 2365 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 EDA2RQ9HAV5 297 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 SNAI2O43623 268 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 NBL1P41271 181 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 ARMS2P0C7Q2 107 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 FOXL2P58012 376 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 PIP4P2Q8N4L2 257 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 ACACBO00763 2458 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 DEFB124Q8NES8 71 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 MRPL51Q4U2R6 128 aaKnown RBP3.88□□□□□ -1.79
PCDH9-201ENST00000377861 HHLA3Q9XRX5 114 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 CACNA1EQ15878 2313 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 TIRAPP58753 221 aa3.88□□□□□ -1.79
PCDH9-201ENST00000377861 CCDC88CQ9P219 2028 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 A0A0G2JRQ6 117 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 COL9A2Q14055 689 aaPredicted RBP3.87□□□□□ -1.79
PCDH9-201ENST00000377861 C7orf69Q9H7B7 122 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 PRSS29PA6NIE9 313 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 ADARB2-AS1A8MUL3 147 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 TRACP01848 142 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 ATP5EP56381 51 aaPredicted RBP3.87□□□□□ -1.79
PCDH9-201ENST00000377861 SPINK9Q5DT21 86 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 PYYP10082 97 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 HOXB4P17483 251 aaPredicted RBP3.87□□□□□ -1.79
PCDH9-201ENST00000377861 IGHV3OR15-7A0A075B7D8 119 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 FAM216BQ8N7L0 139 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 C2orf82Q6UX34 121 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 SHROOM3Q8TF72 1996 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 UNC13CQ8NB66 2214 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 PLXNA3P51805 1871 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 TRAV8-4A0A0B4J246 113 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 LY6LH3BQJ8 138 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 FOXI1Q12951 378 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 SHANK1Q9Y566 2161 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 TRBV10-2A0A0K0K1G8 114 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 IGLC6P0CF74 106 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 TRAV40A0A0B4J280 105 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 SVILO95425 2214 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 FAM222AQ5U5X8 452 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 IGHV1OR15-1A0A075B7D0 117 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 IGLV2-8P01709 118 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 CELA3AP09093 270 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 C8orf86Q6ZUL3 223 aa3.87□□□□□ -1.79
PCDH9-201ENST00000377861 TNFRSF13BO14836 293 aaPredicted RBP3.86□□□□□ -1.79
PCDH9-201ENST00000377861 IGHG2P01859 326 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 AGPAT4-IT1Q9H0P7 198 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 ATP5J2P56134 94 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 INTS1Q8N201 2190 aaKnown RBP3.86□□□□□ -1.79
PCDH9-201ENST00000377861 COL4A1P02462 1669 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 ZNF841Q6ZN19 808 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 COX6B1P14854 86 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 SS18Q15532 418 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 SIPA1L1O43166 1804 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 SPTBN1Q01082 2364 aaKnown RBP3.86□□□□□ -1.79
PCDH9-201ENST00000377861 RNF224P0DH78 156 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 MED19A0JLT2 244 aaPredicted RBP3.86□□□□□ -1.79
PCDH9-201ENST00000377861 C6orf226Q5I0X4 101 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 CFHR4Q92496 578 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 TINCRA0A1B0GVN0 87 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 EPOPA6NHQ4 379 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 IGLL5B9A064 214 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 IGLV2-23P01705 113 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 RNF114Q9Y508 228 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 ODF1Q14990 250 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 MSMBP08118 114 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 AMTNQ6UX39 209 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 BDP1A6H8Y1 2624 aa3.86□□□□□ -1.79
PCDH9-201ENST00000377861 ANKRD31Q8N7Z5 1873 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms