RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 GAS8-AS1O95177 125 aa16.45■□□□□ 0.22
UPF3A-202ENST00000375299 Q8NA96 180 aa16.45■□□□□ 0.22
UPF3A-202ENST00000375299 NPBQ8NG41 125 aa16.45■□□□□ 0.22
UPF3A-202ENST00000375299 IGKCP01834 107 aa16.45■□□□□ 0.22
UPF3A-202ENST00000375299 CFHR4Q92496 578 aa16.45■□□□□ 0.22
UPF3A-202ENST00000375299 PSMG3-AS1Q96PY0 264 aa16.45■□□□□ 0.22
UPF3A-202ENST00000375299 TTTY13Q9BZ97 58 aa16.45■□□□□ 0.22
UPF3A-202ENST00000375299 ONECUT1Q9UBC0 465 aa16.45■□□□□ 0.22
UPF3A-202ENST00000375299 TNFRSF6BO95407 300 aa16.44■□□□□ 0.22
UPF3A-202ENST00000375299 ORM1P02763 201 aa16.44■□□□□ 0.22
UPF3A-202ENST00000375299 DMXL2Q8TDJ6 3036 aa16.44■□□□□ 0.22
UPF3A-202ENST00000375299 PRSS1P07477 247 aa16.44■□□□□ 0.22
UPF3A-202ENST00000375299 EVI2AP22794 236 aa16.44■□□□□ 0.22
UPF3A-202ENST00000375299 C21orf62Q9NYP8 219 aa16.44■□□□□ 0.22
UPF3A-202ENST00000375299 IGHG4P01861 327 aa16.43■□□□□ 0.22
UPF3A-202ENST00000375299 HLA-DMBP28068 263 aa16.43■□□□□ 0.22
UPF3A-202ENST00000375299 LINC01559Q495D7 138 aa16.43■□□□□ 0.22
UPF3A-202ENST00000375299 IGFL4Q6B9Z1 124 aa16.43■□□□□ 0.22
UPF3A-202ENST00000375299 SMAD5-AS1Q9Y6J3 95 aa16.43■□□□□ 0.22
UPF3A-202ENST00000375299 B9A039 149 aa16.43■□□□□ 0.22
UPF3A-202ENST00000375299 RIF1Q5UIP0 2472 aaKnown RBP16.42■□□□□ 0.22
UPF3A-202ENST00000375299 FOXC2Q99958 501 aa16.42■□□□□ 0.22
UPF3A-202ENST00000375299 DPM3Q9P2X0 92 aa16.42■□□□□ 0.22
UPF3A-202ENST00000375299 PCNX1Q96RV3 2341 aa16.42■□□□□ 0.22
UPF3A-202ENST00000375299 ZFHX2Q9C0A1 2572 aaPredicted RBP16.42■□□□□ 0.22
UPF3A-202ENST00000375299 FABP5P3A8MUU1 101 aa16.42■□□□□ 0.22
UPF3A-202ENST00000375299 C5orf64Q2M2E5 130 aa16.42■□□□□ 0.22
UPF3A-202ENST00000375299 PHLDA1Q8WV24 401 aaPredicted RBP16.42■□□□□ 0.22
UPF3A-202ENST00000375299 IGFBPL1Q8WX77 278 aa16.42■□□□□ 0.22
UPF3A-202ENST00000375299 SMPXQ9UHP9 88 aa16.42■□□□□ 0.22
UPF3A-202ENST00000375299 TRBV25-1A0A075B6N4 114 aa16.41■□□□□ 0.22
UPF3A-202ENST00000375299 K7ERJ3 54 aa16.41■□□□□ 0.22
UPF3A-202ENST00000375299 ATP5LO75964 103 aa16.41■□□□□ 0.22
UPF3A-202ENST00000375299 IGHV3-23P01764 117 aa16.41■□□□□ 0.22
UPF3A-202ENST00000375299 GTSCR1Q86UQ5 136 aa16.41■□□□□ 0.22
UPF3A-202ENST00000375299 TMEM158Q8WZ71 300 aa16.41■□□□□ 0.22
UPF3A-202ENST00000375299 DCHS1Q96JQ0 3298 aa16.41■□□□□ 0.22
UPF3A-202ENST00000375299 DPM2O94777 84 aa16.41■□□□□ 0.22
UPF3A-202ENST00000375299 HLA-DRB4P13762 266 aa16.4■□□□□ 0.22
UPF3A-202ENST00000375299 TTC9CQ8N5M4 171 aa16.4■□□□□ 0.22
UPF3A-202ENST00000375299 ARPC1AQ92747 370 aa16.4■□□□□ 0.22
UPF3A-202ENST00000375299 HLA-DRB4X5D2U9 266 aa16.4■□□□□ 0.22
UPF3A-202ENST00000375299 GATA1P15976 413 aaPredicted RBP16.4■□□□□ 0.22
UPF3A-202ENST00000375299 RPL24P83731 157 aaKnown RBP16.4■□□□□ 0.22
UPF3A-202ENST00000375299 HES1Q14469 280 aa16.4■□□□□ 0.22
UPF3A-202ENST00000375299 ZC2HC1BQ5TFG8 222 aa16.4■□□□□ 0.22
UPF3A-202ENST00000375299 CEND1Q8N111 149 aa16.4■□□□□ 0.22
UPF3A-202ENST00000375299 Q8N8P6 123 aa16.4■□□□□ 0.22
UPF3A-202ENST00000375299 TM2D2Q9BX73 214 aa16.4■□□□□ 0.22
UPF3A-202ENST00000375299 TEX48A0A1B0GUV7 120 aa16.39■□□□□ 0.21
UPF3A-202ENST00000375299 ACACAQ13085 2346 aa16.39■□□□□ 0.21
UPF3A-202ENST00000375299 PIEZO2Q9H5I5 2752 aa16.39■□□□□ 0.21
UPF3A-202ENST00000375299 NDPQ00604 133 aa16.38■□□□□ 0.21
UPF3A-202ENST00000375299 LY6G5BQ8NDX9 201 aa16.38■□□□□ 0.21
UPF3A-202ENST00000375299 OR11H6Q8NGC7 330 aa16.38■□□□□ 0.21
UPF3A-202ENST00000375299 NHP2Q9NX24 153 aaKnown RBP16.38■□□□□ 0.21
UPF3A-202ENST00000375299 PRR30Q53SZ7 412 aaPredicted RBP16.38■□□□□ 0.21
UPF3A-202ENST00000375299 DYNAPQ8N1N2 210 aa16.38■□□□□ 0.21
UPF3A-202ENST00000375299 IGLV2-18A0A075B6J9 118 aa16.37■□□□□ 0.21
UPF3A-202ENST00000375299 TMEM8BA6NDV4 472 aa16.37■□□□□ 0.21
UPF3A-202ENST00000375299 SCGB2A1O75556 95 aa16.37■□□□□ 0.21
UPF3A-202ENST00000375299 ERCC8Q13216 396 aa16.37■□□□□ 0.21
UPF3A-202ENST00000375299 DTX2Q86UW9 622 aa16.37■□□□□ 0.21
UPF3A-202ENST00000375299 CD3EP07766 207 aa16.36■□□□□ 0.21
UPF3A-202ENST00000375299 CTSGP08311 255 aa16.36■□□□□ 0.21
UPF3A-202ENST00000375299 PPIFP30405 207 aaKnown RBP16.36■□□□□ 0.21
UPF3A-202ENST00000375299 SRSF1Q07955 248 aaKnown RBP eCLIP16.36■□□□□ 0.213e-6■□□□□ 11.2
UPF3A-202ENST00000375299 KLRD1Q13241 179 aa16.35■□□□□ 0.21
UPF3A-202ENST00000375299 TMEM160Q9NX00 188 aa16.35■□□□□ 0.21
UPF3A-202ENST00000375299 GVINP1Q7Z2Y8 2422 aa16.35■□□□□ 0.21
UPF3A-202ENST00000375299 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.35■□□□□ 0.21
UPF3A-202ENST00000375299 PRAC2D3DTV9 90 aa16.35■□□□□ 0.21
UPF3A-202ENST00000375299 TRAV40A0A0B4J280 105 aa16.34■□□□□ 0.21
UPF3A-202ENST00000375299 E9PLD3 99 aa16.34■□□□□ 0.21
UPF3A-202ENST00000375299 SAMD13Q5VXD3 122 aa16.34■□□□□ 0.21
UPF3A-202ENST00000375299 MRPL35Q9NZE8 188 aaKnown RBP16.34■□□□□ 0.21
UPF3A-202ENST00000375299 ODF3BA8MYP8 253 aa16.33■□□□□ 0.2
UPF3A-202ENST00000375299 ZNF672Q499Z4 452 aaPredicted RBP16.33■□□□□ 0.2
UPF3A-202ENST00000375299 IL17RELQ6ZVW7 336 aa16.33■□□□□ 0.2
UPF3A-202ENST00000375299 IGHV3OR16-8A0A075B7F1 116 aa16.33■□□□□ 0.2
UPF3A-202ENST00000375299 IGLL5B9A064 214 aa16.33■□□□□ 0.2
UPF3A-202ENST00000375299 TAL2Q16559 108 aa16.33■□□□□ 0.2
UPF3A-202ENST00000375299 MYOZ3Q8TDC0 251 aa16.33■□□□□ 0.2
UPF3A-202ENST00000375299 IGKV3D-20A0A0C4DH25 116 aa16.32■□□□□ 0.2
UPF3A-202ENST00000375299 RBAKDNA6NC62 111 aa16.32■□□□□ 0.2
UPF3A-202ENST00000375299 NCBP2LA6PVI3 153 aaKnown RBP16.32■□□□□ 0.2
UPF3A-202ENST00000375299 TRGV3P03979 118 aa16.32■□□□□ 0.2
UPF3A-202ENST00000375299 MAPKAPK5-AS1Q8N8E1 139 aa16.32■□□□□ 0.2
UPF3A-202ENST00000375299 APC2O95996 2303 aa16.31■□□□□ 0.2
UPF3A-202ENST00000375299 PRSS47A8MTI9 375 aa16.31■□□□□ 0.2
UPF3A-202ENST00000375299 K7EMI3 77 aa16.31■□□□□ 0.2
UPF3A-202ENST00000375299 LAGE3Q14657 143 aa16.31■□□□□ 0.2
UPF3A-202ENST00000375299 F8W1H4 67 aa16.3■□□□□ 0.2
UPF3A-202ENST00000375299 FOXI2Q6ZQN5 318 aa16.3■□□□□ 0.2
UPF3A-202ENST00000375299 RNF182Q8N6D2 247 aa16.3■□□□□ 0.2
UPF3A-202ENST00000375299 NRACQ8N912 160 aa16.3■□□□□ 0.2
UPF3A-202ENST00000375299 ZNF479Q96JC4 524 aa16.3■□□□□ 0.2
UPF3A-202ENST00000375299 IGHV3-35A0A0C4DH35 117 aa16.3■□□□□ 0.2
UPF3A-202ENST00000375299 C11orf21Q9P2W6 132 aa16.3■□□□□ 0.2
UPF3A-202ENST00000375299 CHTOPQ9Y3Y2 248 aaKnown RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms