RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 HIST1H2BBP33778 126 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 HIST1H2BDP58876 126 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 HIST1H2BCP62807 126 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 HIST2H2BEQ16778 126 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.46□□□□□ -0.42
PTPRF-201ENST00000359947 HIST1H2BHQ93079 126 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 HIST1H2BNQ99877 126 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 HIST1H2BMQ99879 126 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 DKK4Q9UBT3 224 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 ADAMTS9Q9P2N4 1935 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 KIF26AQ9ULI4 1882 aaPredicted RBP12.46□□□□□ -0.42
PTPRF-201ENST00000359947 TMEM213A2RRL7 107 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 QRFPP83859 136 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 PMVKQ15126 192 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 Q86TA4 180 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 ORAOV1Q8WV07 137 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 SRSF8Q9BRL6 282 aaKnown RBP12.45□□□□□ -0.42
PTPRF-201ENST00000359947 TRAV8-3A0A0A6YYJ7 113 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 Q8TCH9 128 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 MYMXA0A1B0GTQ4 84 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 LY6G5BQ8NDX9 201 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 TMEM242Q9NWH2 141 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 IGKV2D-24A0A075B6R9 120 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 IGHV4-30-2A0A087WSY4 118 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 CDKN1BP46527 198 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 GUSBP1Q15486 140 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 RASL11AQ6T310 242 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 ZNF479Q96JC4 524 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 RLFQ13129 1914 aa12.45□□□□□ -0.42
PTPRF-201ENST00000359947 ZNF833PQ6ZTB9 187 aa12.44□□□□□ -0.42
PTPRF-201ENST00000359947 NOP10Q9NPE3 64 aaKnown RBP12.44□□□□□ -0.42
PTPRF-201ENST00000359947 IGHV1OR15-1A0A075B7D0 117 aa12.44□□□□□ -0.42
PTPRF-201ENST00000359947 A8MWV9 139 aa12.44□□□□□ -0.42
PTPRF-201ENST00000359947 HOXB4P17483 251 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-201ENST00000359947 NEGR1Q7Z3B1 354 aa12.44□□□□□ -0.42
PTPRF-201ENST00000359947 SAMD5Q5TGI4 173 aa12.44□□□□□ -0.42
PTPRF-201ENST00000359947 TP53TG1Q9Y2A0 90 aa12.44□□□□□ -0.42
PTPRF-201ENST00000359947 IGKV1-6A0A0C4DH72 117 aa12.44□□□□□ -0.42
PTPRF-201ENST00000359947 AMBPP02760 352 aa12.44□□□□□ -0.42
PTPRF-201ENST00000359947 SNHG12Q9BXW3 62 aa12.44□□□□□ -0.42
PTPRF-201ENST00000359947 ANAPC1Q9H1A4 1944 aa12.44□□□□□ -0.42
PTPRF-201ENST00000359947 VPREB3Q9UKI3 123 aa12.43□□□□□ -0.42
PTPRF-201ENST00000359947 NDUFA4L2Q9NRX3 87 aa12.43□□□□□ -0.42
PTPRF-201ENST00000359947 TSC2P49815 1807 aa12.43□□□□□ -0.42
PTPRF-201ENST00000359947 RSPO3Q9BXY4 272 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-201ENST00000359947 FOXL2NBQ6ZUU3 175 aa12.43□□□□□ -0.42
PTPRF-201ENST00000359947 NDUFA4O00483 81 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 RNASE13Q5GAN3 156 aaKnown RBP12.42□□□□□ -0.42
PTPRF-201ENST00000359947 ASPHD1Q5U4P2 390 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 IGHV2-5P01817 119 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 APRG1Q8IVJ8 170 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 BCL6BQ8N143 479 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-201ENST00000359947 TNFRSF6BO95407 300 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 IGHV4-38-2P0DP08 117 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 TMEM14BQ9NUH8 114 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 LINC01549A6NIU2 74 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 EDA2RQ9HAV5 297 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 SMPXQ9UHP9 88 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 SIP14410 1827 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 SHISA9B4DS77 424 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 IGHV4-61A0A0C4DH41 118 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 TMEM243Q9BU79 118 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 Q6ZQT7 251 aa12.42□□□□□ -0.42
PTPRF-201ENST00000359947 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-201ENST00000359947 PFN1P07737 140 aaKnown RBP12.41□□□□□ -0.42
PTPRF-201ENST00000359947 LGALS1P09382 135 aaKnown RBP12.41□□□□□ -0.42
PTPRF-201ENST00000359947 SLURP1P55000 103 aa12.41□□□□□ -0.42
PTPRF-201ENST00000359947 HAPLN4Q86UW8 402 aa12.41□□□□□ -0.42
PTPRF-201ENST00000359947 C22orf46C9J442 243 aa12.41□□□□□ -0.42
PTPRF-201ENST00000359947 CYTL1Q9NRR1 136 aa12.41□□□□□ -0.42
PTPRF-201ENST00000359947 KLF12Q9Y4X4 402 aa12.41□□□□□ -0.42
PTPRF-201ENST00000359947 TNCP24821 2201 aa12.41□□□□□ -0.42
PTPRF-201ENST00000359947 ZFAND6Q6FIF0 208 aa12.41□□□□□ -0.42
PTPRF-201ENST00000359947 A0A087X0K7 114 aa12.41□□□□□ -0.42
PTPRF-201ENST00000359947 NLRC5Q86WI3 1866 aa12.41□□□□□ -0.42
PTPRF-201ENST00000359947 LOC105371267A0A1B0GV96 52 aa12.41□□□□□ -0.42
PTPRF-201ENST00000359947 I3L3M4 83 aa12.41□□□□□ -0.42
PTPRF-201ENST00000359947 TRAV25A0A0B4J276 109 aa12.4□□□□□ -0.42
PTPRF-201ENST00000359947 OCIAD2Q56VL3 154 aa12.4□□□□□ -0.42
PTPRF-201ENST00000359947 A0A1B0GUS0 222 aa12.4□□□□□ -0.42
PTPRF-201ENST00000359947 PDE6HQ13956 83 aa12.4□□□□□ -0.42
PTPRF-201ENST00000359947 PRSS29PA6NIE9 313 aa12.4□□□□□ -0.42
PTPRF-201ENST00000359947 ESDP10768 282 aa12.4□□□□□ -0.42
PTPRF-201ENST00000359947 MALRD1Q5VYJ5 2156 aa12.4□□□□□ -0.42
PTPRF-201ENST00000359947 MED13Q9UHV7 2174 aa12.4□□□□□ -0.42
PTPRF-201ENST00000359947 NCKAP5O14513 1909 aa12.4□□□□□ -0.42
PTPRF-201ENST00000359947 ESM1Q9NQ30 184 aa12.4□□□□□ -0.42
PTPRF-201ENST00000359947 F6UB75 175 aa12.4□□□□□ -0.43
PTPRF-201ENST00000359947 UBE2BP63146 152 aa12.4□□□□□ -0.43
PTPRF-201ENST00000359947 GAGE2BQ13066 116 aa12.39□□□□□ -0.43
PTPRF-201ENST00000359947 GAGE2EQ4V326 116 aa12.39□□□□□ -0.43
PTPRF-201ENST00000359947 RMI2Q96E14 147 aa12.39□□□□□ -0.43
PTPRF-201ENST00000359947 GAGE2DQ9UEU5 116 aa12.39□□□□□ -0.43
PTPRF-201ENST00000359947 RHODO00212 210 aa12.39□□□□□ -0.43
PTPRF-201ENST00000359947 ZNF134P52741 427 aa12.39□□□□□ -0.43
PTPRF-201ENST00000359947 YPEL3P61236 119 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-201ENST00000359947 TMEM256Q8N2U0 113 aa12.39□□□□□ -0.43
PTPRF-201ENST00000359947 NDUFAF3Q9BU61 184 aa12.39□□□□□ -0.43
PTPRF-201ENST00000359947 MRPL27Q9P0M9 148 aaKnown RBP12.39□□□□□ -0.43
PTPRF-201ENST00000359947 KLF5Q13887 457 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 119.6 ms