RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 CCDC140Q96MF4 163 aa11.27□□□□□ -0.61
TDP2-201ENST00000341060 BPESC1Q9GZL8 116 aa11.27□□□□□ -0.61
TDP2-201ENST00000341060 MS4A6AQ9H2W1 248 aa11.27□□□□□ -0.61
TDP2-201ENST00000341060 SCRT2Q9NQ03 307 aa11.27□□□□□ -0.61
TDP2-201ENST00000341060 TP73-AS1Q9UF72 201 aa11.27□□□□□ -0.61
TDP2-201ENST00000341060 TIMM8BQ9Y5J9 83 aaPredicted RBP11.27□□□□□ -0.61
TDP2-201ENST00000341060 SPTAN1Q13813 2472 aaKnown RBP11.27□□□□□ -0.61
TDP2-201ENST00000341060 FOSL1P15407 271 aa11.26□□□□□ -0.61
TDP2-201ENST00000341060 MRPL51Q4U2R6 128 aaKnown RBP11.26□□□□□ -0.61
TDP2-201ENST00000341060 SLC25A34Q6PIV7 304 aa11.26□□□□□ -0.61
TDP2-201ENST00000341060 ZNF575Q86XF7 245 aa11.26□□□□□ -0.61
TDP2-201ENST00000341060 MCRIP2Q9BUT9 160 aaKnown RBP11.26□□□□□ -0.61
TDP2-201ENST00000341060 GOSR1O95249 250 aa11.26□□□□□ -0.61
TDP2-201ENST00000341060 FAM106AQ4KMX7 169 aa11.26□□□□□ -0.61
TDP2-201ENST00000341060 ORAOV1Q8WV07 137 aa11.26□□□□□ -0.61
TDP2-201ENST00000341060 CENPVL3A0A0U1RRI6 287 aa11.25□□□□□ -0.61
TDP2-201ENST00000341060 CLPSL1A2RUU4 121 aa11.25□□□□□ -0.61
TDP2-201ENST00000341060 RBAKDNA6NC62 111 aa11.25□□□□□ -0.61
TDP2-201ENST00000341060 PSMG3-AS1Q96PY0 264 aa11.25□□□□□ -0.61
TDP2-201ENST00000341060 SLC50A1Q9BRV3 221 aa11.25□□□□□ -0.61
TDP2-201ENST00000341060 CNFNQ9BYD5 112 aa11.25□□□□□ -0.61
TDP2-201ENST00000341060 MUC21A0A0G2JKD1 596 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 MUC21A0A140T8X8 626 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 G3V318 75 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 LOXL1Q08397 574 aaPredicted RBP11.24□□□□□ -0.61
TDP2-201ENST00000341060 TWIST1Q15672 202 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 MUC21Q5SSG8 566 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 PIP4P2Q8N4L2 257 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 CHD6Q8TD26 2715 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 ABCA2Q9BZC7 2435 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 UTP20O75691 2785 aaKnown RBP11.24□□□□□ -0.61
TDP2-201ENST00000341060 LOC389332A0A1B0GUA5 103 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 FABP5P3A8MUU1 101 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 NPFFO15130 113 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 PMCHL2Q9BQD1 86 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 COX11Q9Y6N1 276 aa11.24□□□□□ -0.61
TDP2-201ENST00000341060 USP9XQ93008 2570 aaPredicted RBP11.24□□□□□ -0.61
TDP2-201ENST00000341060 AKAP6Q13023 2319 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 TRBV7-1A0A0A6YYK4 115 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 LINC01548A6NM66 108 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 PAX8Q06710 450 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 LINC01559Q495D7 138 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 CLEC19AQ6UXS0 136 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 C5orf56Q8N8D9 126 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 ITLN2Q8WWU7 325 aaPredicted RBP11.23□□□□□ -0.61
TDP2-201ENST00000341060 EEF1AKMT3Q96AZ1 226 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 PRAC2D3DTV9 90 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 NCR2O95944 276 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 ORM1P02763 201 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 ERCC8Q13216 396 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 MPV17L2Q567V2 206 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 RNF182Q8N6D2 247 aa11.23□□□□□ -0.61
TDP2-201ENST00000341060 CKS2P33552 79 aa11.22□□□□□ -0.61
TDP2-201ENST00000341060 ZNF738Q8NE65 137 aa11.22□□□□□ -0.61
TDP2-201ENST00000341060 NPYP01303 97 aa11.21□□□□□ -0.61
TDP2-201ENST00000341060 HBDP02042 147 aa11.21□□□□□ -0.62
TDP2-201ENST00000341060 IL17RELQ6ZVW7 336 aa11.21□□□□□ -0.62
TDP2-201ENST00000341060 ZNF843Q8N446 348 aa11.21□□□□□ -0.62
TDP2-201ENST00000341060 OR8A1Q8NGG7 326 aa11.21□□□□□ -0.62
TDP2-201ENST00000341060 METTL26Q96S19 204 aa11.21□□□□□ -0.62
TDP2-201ENST00000341060 IGHV3-66A0A0C4DH42 116 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 Q6ZVH6 145 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 MRPL53Q96EL3 112 aaKnown RBP11.2□□□□□ -0.62
TDP2-201ENST00000341060 RNF185Q96GF1 192 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 MSRB1Q9NZV6 116 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 VPS13CQ709C8 3753 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 SMKR1H3BMG3 65 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 NUDT3O95989 172 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 PPBPP02775 128 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 COX8AP10176 69 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 LGALS9BQ3B8N2 356 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 BVES-AS1Q5T3Y7 98 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 LGALS9CQ6DKI2 356 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 C12orf54Q6X4T0 127 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 DPF1Q92782 380 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 ATP6V0BQ99437 205 aa11.2□□□□□ -0.62
TDP2-201ENST00000341060 CRYBG3Q68DQ2 2970 aa11.19□□□□□ -0.62
TDP2-201ENST00000341060 TRAV8-2A0A0B4J237 113 aa11.19□□□□□ -0.62
TDP2-201ENST00000341060 TCF21O43680 179 aa11.19□□□□□ -0.62
TDP2-201ENST00000341060 HIST1H1AQ02539 215 aaPredicted RBP11.19□□□□□ -0.62
TDP2-201ENST00000341060 PRSS57Q6UWY2 283 aa11.19□□□□□ -0.62
TDP2-201ENST00000341060 NPFFR1Q9GZQ6 430 aa11.19□□□□□ -0.62
TDP2-201ENST00000341060 U3KQE9 123 aa11.19□□□□□ -0.62
TDP2-201ENST00000341060 IGHV3OR16-13A0A075B7E8 117 aa11.18□□□□□ -0.62
TDP2-201ENST00000341060 IGHV3-74A0A0B4J1X5 117 aa11.18□□□□□ -0.62
TDP2-201ENST00000341060 C19orf84I3L1E1 186 aa11.18□□□□□ -0.62
TDP2-201ENST00000341060 C19orf54Q5BKX5 351 aa11.18□□□□□ -0.62
TDP2-201ENST00000341060 C8orf86Q6ZUL3 223 aa11.18□□□□□ -0.62
TDP2-201ENST00000341060 AGPAT4-IT1Q9H0P7 198 aa11.18□□□□□ -0.62
TDP2-201ENST00000341060 MOB4Q9Y3A3 225 aa11.18□□□□□ -0.62
TDP2-201ENST00000341060 LINC01546A6NGU7 62 aa11.18□□□□□ -0.62
TDP2-201ENST00000341060 ATP5G2Q06055 141 aa11.18□□□□□ -0.62
TDP2-201ENST00000341060 TMEM219Q86XT9 240 aa11.18□□□□□ -0.62
TDP2-201ENST00000341060 HIF1ANQ9NWT6 349 aa11.18□□□□□ -0.62
TDP2-201ENST00000341060 CELSR1Q9NYQ6 3014 aa11.18□□□□□ -0.62
TDP2-201ENST00000341060 TRAV41A0A0B4J266 112 aa11.17□□□□□ -0.62
TDP2-201ENST00000341060 IGKV3D-20A0A0C4DH25 116 aa11.17□□□□□ -0.62
TDP2-201ENST00000341060 FAM223BA6NKX1 122 aa11.17□□□□□ -0.62
TDP2-201ENST00000341060 CCL25O15444 150 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms