RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 GCSAMLQ5JQS6 135 aa11.45□□□□□ -0.58
CLN3-201ENST00000333496 AMTNQ6UX39 209 aa11.45□□□□□ -0.58
CLN3-201ENST00000333496 MBD3L1Q8WWY6 194 aa11.45□□□□□ -0.58
CLN3-201ENST00000333496 NIPSNAP3BQ9BS92 247 aa11.45□□□□□ -0.58
CLN3-201ENST00000333496 IGHV4-28A0A0C4DH34 117 aa11.44□□□□□ -0.58
CLN3-201ENST00000333496 H3BQ15 152 aa11.44□□□□□ -0.58
CLN3-201ENST00000333496 H3BTX0 84 aa11.44□□□□□ -0.58
CLN3-201ENST00000333496 SLC17A3O00476 420 aa11.44□□□□□ -0.58
CLN3-201ENST00000333496 IFNA1P01562 189 aa11.44□□□□□ -0.58
CLN3-201ENST00000333496 PRB4P10163 310 aaPredicted RBP11.44□□□□□ -0.58
CLN3-201ENST00000333496 MIFP14174 115 aa11.44□□□□□ -0.58
CLN3-201ENST00000333496 RAB5AP20339 215 aa11.44□□□□□ -0.58
CLN3-201ENST00000333496 AKR1C3P42330 323 aa11.44□□□□□ -0.58
CLN3-201ENST00000333496 AKR1D1P51857 326 aa11.44□□□□□ -0.58
CLN3-201ENST00000333496 PSG9Q00887 426 aa11.44□□□□□ -0.58
CLN3-201ENST00000333496 PSG3Q16557 428 aa11.44□□□□□ -0.58
CLN3-201ENST00000333496 LCN15Q6UWW0 184 aa11.44□□□□□ -0.58
CLN3-201ENST00000333496 TVP23CQ96ET8 276 aa11.44□□□□□ -0.58
CLN3-201ENST00000333496 ZNF331Q9NQX6 463 aaPredicted RBP11.44□□□□□ -0.58
CLN3-201ENST00000333496 CXorf65A6NEN9 183 aa11.43□□□□□ -0.58
CLN3-201ENST00000333496 B4DEV8 164 aa11.43□□□□□ -0.58
CLN3-201ENST00000333496 S100A6P06703 90 aa11.43□□□□□ -0.58
CLN3-201ENST00000333496 BCL2P10415 239 aa11.43□□□□□ -0.58
CLN3-201ENST00000333496 CNN1P51911 297 aaKnown RBP11.43□□□□□ -0.58
CLN3-201ENST00000333496 PNRC1Q12796 327 aaPredicted RBP11.43□□□□□ -0.58
CLN3-201ENST00000333496 FFAR4Q5NUL3 377 aa11.43□□□□□ -0.58
CLN3-201ENST00000333496 ZNF705AQ6ZN79 300 aaPredicted RBP11.43□□□□□ -0.58
CLN3-201ENST00000333496 ZNF738Q8NE65 137 aa11.43□□□□□ -0.58
CLN3-201ENST00000333496 C2CD4CQ8TF44 421 aa11.43□□□□□ -0.58
CLN3-201ENST00000333496 KCNIP2Q9NS61 270 aa11.43□□□□□ -0.58
CLN3-201ENST00000333496 NDUFS6O75380 124 aaKnown RBP11.42□□□□□ -0.58
CLN3-201ENST00000333496 MBP02144 154 aa11.42□□□□□ -0.58
CLN3-201ENST00000333496 RPL35P42766 123 aaKnown RBP11.42□□□□□ -0.58
CLN3-201ENST00000333496 NANOS2P60321 138 aaKnown RBP11.42□□□□□ -0.58
CLN3-201ENST00000333496 CYB561D1Q8N8Q1 229 aa11.42□□□□□ -0.58
CLN3-201ENST00000333496 ZNF705FA8MVS1 300 aaPredicted RBP11.42□□□□□ -0.58
CLN3-201ENST00000333496 S100A8P05109 93 aa11.42□□□□□ -0.58
CLN3-201ENST00000333496 TAGLN2P37802 199 aaKnown RBP11.42□□□□□ -0.58
CLN3-201ENST00000333496 ZFP82Q8N141 532 aa11.42□□□□□ -0.58
CLN3-201ENST00000333496 C11orf45Q8TAV5 145 aa11.42□□□□□ -0.58
CLN3-201ENST00000333496 ISOC2Q96AB3 205 aa11.42□□□□□ -0.58
CLN3-201ENST00000333496 SLC50A1Q9BRV3 221 aa11.42□□□□□ -0.58
CLN3-201ENST00000333496 ZNF586Q9NXT0 402 aa11.42□□□□□ -0.58
CLN3-201ENST00000333496 DNAH1Q9P2D7 4330 aa11.41□□□□□ -0.58
CLN3-201ENST00000333496 LCE6AA0A183 80 aa11.41□□□□□ -0.58
CLN3-201ENST00000333496 C5orf52A6NGY3 159 aa11.41□□□□□ -0.58
CLN3-201ENST00000333496 DUSP14O95147 198 aaKnown RBP11.41□□□□□ -0.58
CLN3-201ENST00000333496 OR8A1Q8NGG7 326 aa11.41□□□□□ -0.58
CLN3-201ENST00000333496 YPEL4Q96NS1 127 aa11.41□□□□□ -0.58
CLN3-201ENST00000333496 TCEAL7Q9BRU2 100 aa11.41□□□□□ -0.58
CLN3-201ENST00000333496 GNG13Q9P2W3 67 aa11.41□□□□□ -0.58
CLN3-201ENST00000333496 ACOT6Q3I5F7 207 aaPredicted RBP11.4□□□□□ -0.58
CLN3-201ENST00000333496 CEMP1Q6PRD7 247 aaPredicted RBP11.4□□□□□ -0.58
CLN3-201ENST00000333496 C1orf158Q8N1D5 194 aa11.4□□□□□ -0.58
CLN3-201ENST00000333496 RPUSD4Q96CM3 377 aaKnown RBP11.4□□□□□ -0.58
CLN3-201ENST00000333496 ALMS1Q8TCU4 4167 aa11.4□□□□□ -0.58
CLN3-201ENST00000333496 HYDINQ4G0P3 5121 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 MAP1LC3B2A6NCE7 125 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 M0R2Z0 102 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 CRXO43186 299 aaPredicted RBP11.39□□□□□ -0.59
CLN3-201ENST00000333496 PYYP10082 97 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 HIST1H1AQ02539 215 aaPredicted RBP11.39□□□□□ -0.59
CLN3-201ENST00000333496 ZNF726P1Q15940 193 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 SPINK13Q1W4C9 94 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 MIR17HGQ75NE6 70 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 IQCF2Q8IXL9 164 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 RPP25LQ8N5L8 163 aaKnown RBP11.39□□□□□ -0.59
CLN3-201ENST00000333496 OR10G9Q8NGN4 311 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 OR10G7Q8NGN6 311 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 PHLDA1Q8WV24 401 aaPredicted RBP11.39□□□□□ -0.59
CLN3-201ENST00000333496 FAM167A-AS1Q96KT0 104 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 NEU1Q99519 415 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 C12orf57Q99622 126 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 SLC25A2Q9BXI2 301 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 MAP1LC3BQ9GZQ8 125 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 TMEM14CQ9P0S9 112 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 VAX2Q9UIW0 290 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 RYR2Q92736 4967 aa11.39□□□□□ -0.59
CLN3-201ENST00000333496 IGHV3OR16-12A0A075B7B8 117 aa11.38□□□□□ -0.59
CLN3-201ENST00000333496 NUPR2A6NF83 97 aa11.38□□□□□ -0.59
CLN3-201ENST00000333496 PRAC2D3DTV9 90 aa11.38□□□□□ -0.59
CLN3-201ENST00000333496 SMIM6P0DI80 62 aa11.38□□□□□ -0.59
CLN3-201ENST00000333496 CEBPGP53567 150 aa11.38□□□□□ -0.59
CLN3-201ENST00000333496 S100A12P80511 92 aa11.38□□□□□ -0.59
CLN3-201ENST00000333496 CELA1Q9UNI1 258 aa11.38□□□□□ -0.59
CLN3-201ENST00000333496 CTXND1A0A1B0GTU2 59 aa11.38□□□□□ -0.59
CLN3-201ENST00000333496 HIST1H1EP10412 219 aaKnown RBP11.38□□□□□ -0.59
CLN3-201ENST00000333496 SNRPEP62304 92 aaKnown RBP11.38□□□□□ -0.59
CLN3-201ENST00000333496 SSX7Q7RTT5 188 aa11.38□□□□□ -0.59
CLN3-201ENST00000333496 IGF2BP2-AS1Q96M15 143 aa11.38□□□□□ -0.59
CLN3-201ENST00000333496 ACTR3CQ9C0K3 210 aaPredicted RBP11.38□□□□□ -0.59
CLN3-201ENST00000333496 TMEM242Q9NWH2 141 aa11.38□□□□□ -0.59
CLN3-201ENST00000333496 TRBV19A0A075B6N1 114 aa11.37□□□□□ -0.59
CLN3-201ENST00000333496 ZNF253O75346 499 aa11.37□□□□□ -0.59
CLN3-201ENST00000333496 NDUFB4O95168 129 aa11.37□□□□□ -0.59
CLN3-201ENST00000333496 MANBALQ9NQG1 85 aa11.37□□□□□ -0.59
CLN3-201ENST00000333496 SMIM9A6NGZ8 99 aa11.36□□□□□ -0.59
CLN3-201ENST00000333496 CDC34P49427 236 aaPredicted RBP11.36□□□□□ -0.59
CLN3-201ENST00000333496 MRPL32Q9BYC8 188 aaKnown RBP11.36□□□□□ -0.59
CLN3-201ENST00000333496 GOLT1BQ9Y3E0 138 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms