RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NTN3O00634 580 aaPredicted RBP11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 IGLC2P0DOY2 106 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 IGLC3P0DOY3 106 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 LYL1P12980 280 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 LINC01619G3V211 115 aa11.31□□□□□ -0.6
CCDC88A-201ENST00000263630 DEFB131AP59861 70 aa11.31□□□□□ -0.6
CCDC88A-201ENST00000263630 A0A0B4J2C4 111 aa11.31□□□□□ -0.6
CCDC88A-201ENST00000263630 RPL18AQ02543 176 aaKnown RBP11.31□□□□□ -0.6
CCDC88A-201ENST00000263630 CFHR3Q02985 330 aa11.31□□□□□ -0.6
CCDC88A-201ENST00000263630 ZNF672Q499Z4 452 aaPredicted RBP11.31□□□□□ -0.6
CCDC88A-201ENST00000263630 WFDC1Q9HC57 220 aa11.31□□□□□ -0.6
CCDC88A-201ENST00000263630 CDKN1BP46527 198 aa11.31□□□□□ -0.6
CCDC88A-201ENST00000263630 SIGLEC9Q9Y336 463 aa11.31□□□□□ -0.6
CCDC88A-201ENST00000263630 SDHAF1A6NFY7 115 aa11.31□□□□□ -0.6
CCDC88A-201ENST00000263630 ZNF492Q9P255 531 aa11.31□□□□□ -0.6
CCDC88A-201ENST00000263630 AHDC1Q5TGY3 1603 aaPredicted RBP11.31□□□□□ -0.6
CCDC88A-201ENST00000263630 SIPA1L3O60292 1781 aaPredicted RBP11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 H3BMG7 143 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 TMEM178BH3BS89 294 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 SS18L2Q9UHA2 77 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 IGHV1-18A0A0C4DH31 117 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 IGHV1-46P01743 117 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 GREB1LQ9C091 1923 aaPredicted RBP11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 HGFACQ04756 655 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 SLC25A29Q8N8R3 303 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 PRSS47A8MTI9 375 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 IL15RAQ13261 267 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 ZFP2Q6ZN57 461 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 ZNRF2Q8NHG8 242 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 IGKV2D-24A0A075B6R9 120 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 IGHV1OR15-1A0A075B7D0 117 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 H0YGX0 51 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 TIRAPP58753 221 aa11.3□□□□□ -0.6
CCDC88A-201ENST00000263630 J3QQQ9 107 aa11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 SPTSSBQ8NFR3 76 aa11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 SRRM5B3KS81 715 aa11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 SHANK2-AS3Q9BTD1 123 aa11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 MRPL36Q9P0J6 103 aaKnown RBP11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 XCL2Q9UBD3 114 aa11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 NPYP01303 97 aa11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 NMSQ5H8A3 153 aa11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 IGHV3-16A0A0C4DH30 117 aa11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 H0YIZ8 118 aa11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 SPINK13Q1W4C9 94 aa11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 LINC01620Q4KN68 170 aa11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 TMEM14EPQ6UXP3 125 aa11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 HS3ST6Q96QI5 342 aa11.29□□□□□ -0.6
CCDC88A-201ENST00000263630 IGF2BP2-AS1Q96M15 143 aa11.28□□□□□ -0.6
CCDC88A-201ENST00000263630 PRB4P10163 310 aaPredicted RBP11.28□□□□□ -0.6
CCDC88A-201ENST00000263630 TRAV12-2A0A075B6T6 113 aa11.28□□□□□ -0.6
CCDC88A-201ENST00000263630 IGLL5B9A064 214 aa11.28□□□□□ -0.6
CCDC88A-201ENST00000263630 LY6G6FQ5SQ64 297 aa11.28□□□□□ -0.6
CCDC88A-201ENST00000263630 ZNF134P52741 427 aa11.28□□□□□ -0.6
CCDC88A-201ENST00000263630 PRB2P02812 416 aaPredicted RBP11.28□□□□□ -0.6
CCDC88A-201ENST00000263630 SH2D6Q7Z4S9 175 aa11.28□□□□□ -0.6
CCDC88A-201ENST00000263630 RHOHQ15669 191 aa11.27□□□□□ -0.6
CCDC88A-201ENST00000263630 RPP25LQ8N5L8 163 aaKnown RBP11.27□□□□□ -0.6
CCDC88A-201ENST00000263630 IGHV4-28A0A0C4DH34 117 aa11.27□□□□□ -0.6
CCDC88A-201ENST00000263630 C9orf47Q6ZRZ4 202 aa11.27□□□□□ -0.61
CCDC88A-201ENST00000263630 C20orf78Q9BR46 151 aa11.27□□□□□ -0.61
CCDC88A-201ENST00000263630 KIR2DL5BA0A0G2JN68 375 aa11.27□□□□□ -0.61
CCDC88A-201ENST00000263630 KIR2DL5BA0A0G2JPC4 375 aa11.27□□□□□ -0.61
CCDC88A-201ENST00000263630 PRB1P04280 392 aa11.27□□□□□ -0.61
CCDC88A-201ENST00000263630 GATA4P43694 442 aa11.27□□□□□ -0.61
CCDC88A-201ENST00000263630 KIR2DL5AQ8N109 375 aa11.27□□□□□ -0.61
CCDC88A-201ENST00000263630 ETV2O00321 342 aaPredicted RBP11.27□□□□□ -0.61
CCDC88A-201ENST00000263630 TIMM17AQ99595 171 aa11.27□□□□□ -0.61
CCDC88A-201ENST00000263630 USF3Q68DE3 2245 aa11.27□□□□□ -0.61
CCDC88A-201ENST00000263630 WNK1Q9H4A3 2382 aa11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 TEX22C9J3V5 150 aa11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 ATP5G1P05496 136 aa11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 MST1LQ2TV78 715 aa11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 Q6ZVH6 145 aa11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 TMEM131Q92545 1883 aa11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 RLFQ13129 1914 aa11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 PAX9P55771 341 aa11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 DEFB125Q8N687 156 aa11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 OPRPNQ99935 248 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 POLR3KQ9Y2Y1 108 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 SPANXB1Q9NS25 103 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 MED13Q9UHV7 2174 aa11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 TIAF1O95411 115 aa11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 PYGO2Q9BRQ0 406 aa11.26□□□□□ -0.61
CCDC88A-201ENST00000263630 IGKV4-1P06312 121 aa11.25□□□□□ -0.61
CCDC88A-201ENST00000263630 JMJD7-PLA2G4BH0Y9G9 81 aa11.25□□□□□ -0.61
CCDC88A-201ENST00000263630 PRSS57Q6UWY2 283 aa11.25□□□□□ -0.61
CCDC88A-201ENST00000263630 XCL1P47992 114 aa11.25□□□□□ -0.61
CCDC88A-201ENST00000263630 C18orf32Q8TCD1 76 aa11.25□□□□□ -0.61
CCDC88A-201ENST00000263630 IGKV1D-43A0A0B4J1Z2 117 aa11.25□□□□□ -0.61
CCDC88A-201ENST00000263630 RS1O15537 224 aa11.25□□□□□ -0.61
CCDC88A-201ENST00000263630 UBE2AP49459 152 aa11.25□□□□□ -0.61
CCDC88A-201ENST00000263630 MRPL51Q4U2R6 128 aaKnown RBP11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 ZNF362Q5T0B9 420 aaPredicted RBP11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 KIAA1549Q9HCM3 1950 aa11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 SCN10AQ9Y5Y9 1956 aa11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 GVINP1Q7Z2Y8 2422 aa11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 EML5Q05BV3 1969 aa11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 NCOA6Q14686 2063 aaPredicted RBP11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 LYNX1G3V0Z9 82 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms