RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ATG101Q9BSB4 218 aa15.19■□□□□ 0.02
CLN3-250ENST00000636839 ATRQ13535 2644 aa15.19■□□□□ 0.02
CLN3-250ENST00000636839 BTN1A1Q13410 526 aa15.19■□□□□ 0.02
CLN3-250ENST00000636839 SMUG1Q53HV7 270 aa15.19■□□□□ 0.02
CLN3-250ENST00000636839 TMEM88Q6PEY1 159 aa15.19■□□□□ 0.02
CLN3-250ENST00000636839 LINC01551Q86U37 167 aa15.19■□□□□ 0.02
CLN3-250ENST00000636839 C20orf173Q96LM9 149 aa15.19■□□□□ 0.02
CLN3-250ENST00000636839 RPS10P5Q9NQ39 176 aa15.19■□□□□ 0.02
CLN3-250ENST00000636839 DIRC3C9JPN6 131 aa15.18■□□□□ 0.02
CLN3-250ENST00000636839 K7EN84 100 aa15.18■□□□□ 0.02
CLN3-250ENST00000636839 IGLV2-11P01706 119 aa15.18■□□□□ 0.02
CLN3-250ENST00000636839 WFDC3Q8IUB2 231 aa15.18■□□□□ 0.02
CLN3-250ENST00000636839 IGF2BP2-AS1Q96M15 143 aa15.18■□□□□ 0.02
CLN3-250ENST00000636839 FBN1P35555 2871 aaKnown RBP15.18■□□□□ 0.02
CLN3-250ENST00000636839 IGKV2-40A0A087WW87 121 aaPredicted RBP15.17■□□□□ 0.02
CLN3-250ENST00000636839 SOCS3O14543 225 aa15.17■□□□□ 0.02
CLN3-250ENST00000636839 ZNF253O75346 499 aa15.17■□□□□ 0.02
CLN3-250ENST00000636839 IGKV2D-40P01614 121 aaPredicted RBP15.17■□□□□ 0.02
CLN3-250ENST00000636839 CNN1P51911 297 aaKnown RBP15.17■□□□□ 0.02
CLN3-250ENST00000636839 DEFB1P60022 68 aa15.17■□□□□ 0.02
CLN3-250ENST00000636839 LCN12Q6JVE5 192 aa15.17■□□□□ 0.02
CLN3-250ENST00000636839 C16orf92Q96LL3 132 aa15.17■□□□□ 0.02
CLN3-250ENST00000636839 IGLV2-8P01709 118 aa15.17■□□□□ 0.02
CLN3-250ENST00000636839 CSN3P07498 182 aa15.17■□□□□ 0.02
CLN3-250ENST00000636839 TFPI2P48307 235 aa15.17■□□□□ 0.02
CLN3-250ENST00000636839 GNG4P50150 75 aa15.17■□□□□ 0.02
CLN3-250ENST00000636839 OR5I1Q13606 314 aa15.17■□□□□ 0.02
CLN3-250ENST00000636839 PRIMA1Q86XR5 153 aa15.17■□□□□ 0.02
CLN3-250ENST00000636839 CBLN2Q8IUK8 224 aa15.17■□□□□ 0.02
CLN3-250ENST00000636839 NRN1Q9NPD7 142 aa15.17■□□□□ 0.02
CLN3-250ENST00000636839 KLF12Q9Y4X4 402 aa15.16■□□□□ 0.02
CLN3-250ENST00000636839 TMEM183BQ1AE95 376 aa15.16■□□□□ 0.02
CLN3-250ENST00000636839 TCEAL7Q9BRU2 100 aa15.16■□□□□ 0.02
CLN3-250ENST00000636839 FOXL1Q12952 345 aa15.15■□□□□ 0.02
CLN3-250ENST00000636839 KRTAP24-1Q3LI83 254 aa15.15■□□□□ 0.02
CLN3-250ENST00000636839 FAM24BQ8N5W8 94 aa15.15■□□□□ 0.02
CLN3-250ENST00000636839 VGLL1Q99990 258 aa15.15■□□□□ 0.02
CLN3-250ENST00000636839 SLC50A1Q9BRV3 221 aa15.15■□□□□ 0.02
CLN3-250ENST00000636839 MS4A6AQ9H2W1 248 aa15.15■□□□□ 0.02
CLN3-250ENST00000636839 A0A1B0GUS0 222 aa15.14■□□□□ 0.01
CLN3-250ENST00000636839 C9JCJ5 164 aa15.14■□□□□ 0.01
CLN3-250ENST00000636839 BAGE2Q86Y30 109 aa15.14■□□□□ 0.01
CLN3-250ENST00000636839 PEMTQ9UBM1 199 aa15.14■□□□□ 0.01
CLN3-250ENST00000636839 ZNF705DP0CH99 300 aaPredicted RBP15.14■□□□□ 0.01
CLN3-250ENST00000636839 ZNF705BP0CI00 300 aaPredicted RBP15.14■□□□□ 0.01
CLN3-250ENST00000636839 UBE2G1P62253 170 aa15.14■□□□□ 0.01
CLN3-250ENST00000636839 ERCC8Q13216 396 aa15.14■□□□□ 0.01
CLN3-250ENST00000636839 PRNTQ86SH4 94 aa15.14■□□□□ 0.01
CLN3-250ENST00000636839 DCANP1Q8TF63 244 aa15.14■□□□□ 0.01
CLN3-250ENST00000636839 DNASE2O00115 360 aaPredicted RBP15.13■□□□□ 0.01
CLN3-250ENST00000636839 CSN1S1P47710 185 aa15.13■□□□□ 0.01
CLN3-250ENST00000636839 TAS2R60P59551 318 aa15.13■□□□□ 0.01
CLN3-250ENST00000636839 PNRC1Q12796 327 aaPredicted RBP15.13■□□□□ 0.01
CLN3-250ENST00000636839 RNF212Q495C1 297 aa15.13■□□□□ 0.01
CLN3-250ENST00000636839 NDUFA11Q86Y39 141 aa15.13■□□□□ 0.01
CLN3-250ENST00000636839 RHEBQ15382 184 aa15.12■□□□□ 0.01
CLN3-250ENST00000636839 ISOC2Q96AB3 205 aa15.12■□□□□ 0.01
CLN3-250ENST00000636839 OVOL1O14753 267 aa15.12■□□□□ 0.01
CLN3-250ENST00000636839 TSPAN4O14817 238 aa15.12■□□□□ 0.01
CLN3-250ENST00000636839 MGST1P10620 155 aaKnown RBP15.12■□□□□ 0.01
CLN3-250ENST00000636839 PSG3Q16557 428 aa15.12■□□□□ 0.01
CLN3-250ENST00000636839 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.12■□□□□ 0.01
CLN3-250ENST00000636839 FMC1Q96HJ9 113 aa15.12■□□□□ 0.01
CLN3-250ENST00000636839 BMI1P35226 326 aa15.11■□□□□ 0.01
CLN3-250ENST00000636839 MEOX2P50222 304 aa15.11■□□□□ 0.01
CLN3-250ENST00000636839 Q86TA4 180 aa15.11■□□□□ 0.01
CLN3-250ENST00000636839 Q8TAT8 98 aa15.11■□□□□ 0.01
CLN3-250ENST00000636839 VWFP04275 2813 aa15.11■□□□□ 0.01
CLN3-250ENST00000636839 SORL1Q92673 2214 aa15.11■□□□□ 0.01
CLN3-250ENST00000636839 M0QZ24 198 aa15.1■□□□□ 0.01
CLN3-250ENST00000636839 LTAP01374 205 aa15.1■□□□□ 0.01
CLN3-250ENST00000636839 PSG8Q9UQ74 426 aa15.1■□□□□ 0.01
CLN3-250ENST00000636839 F6UB75 175 aa15.1■□□□□ 0.01
CLN3-250ENST00000636839 FLI1Q01543 452 aaPredicted RBP15.1■□□□□ 0.01
CLN3-250ENST00000636839 TMEM61Q8N0U2 210 aa15.1■□□□□ 0.01
CLN3-250ENST00000636839 TMEM75Q8N9X5 138 aa15.1■□□□□ 0.01
CLN3-250ENST00000636839 ZNF738Q8NE65 137 aa15.1■□□□□ 0.01
CLN3-250ENST00000636839 SPATA3Q8NHX4 192 aa15.1■□□□□ 0.01
CLN3-250ENST00000636839 DEFB114Q30KQ6 69 aa15.09■□□□□ 0.01
CLN3-250ENST00000636839 LINC00322Q6ZN03 302 aaPredicted RBP15.09■□□□□ 0.01
CLN3-250ENST00000636839 MLST8Q9BVC4 326 aa15.09■□□□□ 0.01
CLN3-250ENST00000636839 RNASE7Q9H1E1 156 aaKnown RBP15.09■□□□□ 0.01
CLN3-250ENST00000636839 TMA7Q9Y2S6 64 aaKnown RBP15.09■□□□□ 0.01
CLN3-250ENST00000636839 LOC105371267A0A1B0GV96 52 aa15.09■□□□□ 0.01
CLN3-250ENST00000636839 IZUMO1RA6ND01 250 aa15.09■□□□□ 0.01
CLN3-250ENST00000636839 CD300EQ496F6 205 aaPredicted RBP15.09■□□□□ 0.01
CLN3-250ENST00000636839 C8orf49Q96NF6 230 aa15.09■□□□□ 0.01
CLN3-250ENST00000636839 CITED1Q99966 193 aa15.09■□□□□ 0.01
CLN3-250ENST00000636839 ZNF688P0C7X2 276 aa15.08■□□□□ 0
CLN3-250ENST00000636839 PRR27Q6MZM9 219 aa15.08■□□□□ 0
CLN3-250ENST00000636839 DYNLRB2Q8TF09 96 aa15.08■□□□□ 0
CLN3-250ENST00000636839 GPR61Q9BZJ8 451 aa15.08■□□□□ 0
CLN3-250ENST00000636839 LY96Q9Y6Y9 160 aa15.08■□□□□ 0
CLN3-250ENST00000636839 B4DEV8 164 aa15.07■□□□□ 0
CLN3-250ENST00000636839 K7EQG2 157 aa15.07■□□□□ 0
CLN3-250ENST00000636839 K7EQM0 130 aa15.07■□□□□ 0
CLN3-250ENST00000636839 GCGP01275 180 aa15.07■□□□□ 0
CLN3-250ENST00000636839 SFRP2Q96HF1 295 aa15.07■□□□□ 0
CLN3-250ENST00000636839 AGPAT4-IT1Q9H0P7 198 aa15.07■□□□□ 0
CLN3-250ENST00000636839 PRELID1Q9Y255 219 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms