RNA–Protein interactions for RNA: ENST00000622020.4

NPHP4-211, Transcript of nephrocystin 4, humanhuman

TSL 5 BASIC

Gene NPHP4, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-211ENST00000622020 ASCL5Q7RTU5 278 aa12.41□□□□□ -0.42
NPHP4-211ENST00000622020 PRELID3AQ96N28 172 aa12.41□□□□□ -0.42
NPHP4-211ENST00000622020 SHANK2-AS3Q9BTD1 123 aa12.41□□□□□ -0.42
NPHP4-211ENST00000622020 RABAC1Q9UI14 185 aa12.41□□□□□ -0.42
NPHP4-211ENST00000622020 GNG7O60262 68 aa12.41□□□□□ -0.42
NPHP4-211ENST00000622020 PPIFP30405 207 aaKnown RBP12.41□□□□□ -0.42
NPHP4-211ENST00000622020 GFRALQ6UXV0 394 aa12.41□□□□□ -0.42
NPHP4-211ENST00000622020 PIP4P2Q8N4L2 257 aa12.41□□□□□ -0.42
NPHP4-211ENST00000622020 C1RLQ9NZP8 487 aa12.41□□□□□ -0.42
NPHP4-211ENST00000622020 RBPJQ06330 500 aa12.4□□□□□ -0.42
NPHP4-211ENST00000622020 KLRD1Q13241 179 aa12.4□□□□□ -0.42
NPHP4-211ENST00000622020 ABHD17AQ96GS6 310 aa12.4□□□□□ -0.42
NPHP4-211ENST00000622020 ZNF414Q96IQ9 312 aa12.4□□□□□ -0.42
NPHP4-211ENST00000622020 MSRB1Q9NZV6 116 aa12.4□□□□□ -0.42
NPHP4-211ENST00000622020 ZFHX3Q15911 3703 aa12.4□□□□□ -0.42
NPHP4-211ENST00000622020 TMEM189A5PLL7 270 aa12.4□□□□□ -0.42
NPHP4-211ENST00000622020 GAS8-AS1O95177 125 aa12.4□□□□□ -0.42
NPHP4-211ENST00000622020 TWIST1Q15672 202 aa12.4□□□□□ -0.42
NPHP4-211ENST00000622020 TMEM97Q5BJF2 176 aa12.4□□□□□ -0.42
NPHP4-211ENST00000622020 TTTY13Q9BZ97 58 aa12.4□□□□□ -0.42
NPHP4-211ENST00000622020 H3BUT2 72 aa12.4□□□□□ -0.43
NPHP4-211ENST00000622020 CD5LO43866 347 aa12.4□□□□□ -0.43
NPHP4-211ENST00000622020 IGFL3Q6UXB1 125 aa12.4□□□□□ -0.43
NPHP4-211ENST00000622020 LINC01560Q8TB33 94 aa12.4□□□□□ -0.43
NPHP4-211ENST00000622020 SHISA9B4DS77 424 aa12.39□□□□□ -0.43
NPHP4-211ENST00000622020 PCP2Q8IVA1 136 aa12.39□□□□□ -0.43
NPHP4-211ENST00000622020 MS4A6AQ9H2W1 248 aa12.39□□□□□ -0.43
NPHP4-211ENST00000622020 TMEM14CQ9P0S9 112 aa12.39□□□□□ -0.43
NPHP4-211ENST00000622020 ATRXP46100 2492 aa12.39□□□□□ -0.43
NPHP4-211ENST00000622020 GAGE10A6NGK3 116 aa12.39□□□□□ -0.43
NPHP4-211ENST00000622020 VSTM5A8MXK1 200 aa12.39□□□□□ -0.43
NPHP4-211ENST00000622020 TMEM238C9JI98 176 aa12.39□□□□□ -0.43
NPHP4-211ENST00000622020 SH2D1AO60880 128 aa12.39□□□□□ -0.43
NPHP4-211ENST00000622020 AP1S3Q96PC3 154 aa12.38□□□□□ -0.43
NPHP4-211ENST00000622020 AAMDCQ9H7C9 122 aa12.38□□□□□ -0.43
NPHP4-211ENST00000622020 IGHV3OR16-13A0A075B7E8 117 aa12.38□□□□□ -0.43
NPHP4-211ENST00000622020 IGHV3-74A0A0B4J1X5 117 aa12.38□□□□□ -0.43
NPHP4-211ENST00000622020 NCBP2LA6PVI3 153 aaKnown RBP12.38□□□□□ -0.43
NPHP4-211ENST00000622020 H3BRN7 92 aa12.38□□□□□ -0.43
NPHP4-211ENST00000622020 CKS2P33552 79 aa12.38□□□□□ -0.43
NPHP4-211ENST00000622020 COL6A6A6NMZ7 2263 aa12.38□□□□□ -0.43
NPHP4-211ENST00000622020 K7EMI3 77 aa12.37□□□□□ -0.43
NPHP4-211ENST00000622020 K7ERU9 68 aa12.37□□□□□ -0.43
NPHP4-211ENST00000622020 MRPL51Q4U2R6 128 aaKnown RBP12.37□□□□□ -0.43
NPHP4-211ENST00000622020 PVRIGQ6DKI7 326 aa12.37□□□□□ -0.43
NPHP4-211ENST00000622020 C8orf31Q8N9H6 132 aa12.37□□□□□ -0.43
NPHP4-211ENST00000622020 DKK2Q9UBU2 259 aa12.37□□□□□ -0.43
NPHP4-211ENST00000622020 NPYP01303 97 aa12.37□□□□□ -0.43
NPHP4-211ENST00000622020 EVI2AP22794 236 aa12.37□□□□□ -0.43
NPHP4-211ENST00000622020 PEF1Q9UBV8 284 aaKnown RBP12.37□□□□□ -0.43
NPHP4-211ENST00000622020 MAP1AP78559 2803 aaPredicted RBP12.37□□□□□ -0.43
NPHP4-211ENST00000622020 IGHV3-66A0A0C4DH42 116 aa12.37□□□□□ -0.43
NPHP4-211ENST00000622020 EGR2P11161 476 aaPredicted RBP12.37□□□□□ -0.43
NPHP4-211ENST00000622020 ZNF80P51504 273 aaPredicted RBP12.37□□□□□ -0.43
NPHP4-211ENST00000622020 ORMDL3Q8N138 153 aa12.37□□□□□ -0.43
NPHP4-211ENST00000622020 VGLL1Q99990 258 aa12.37□□□□□ -0.43
NPHP4-211ENST00000622020 KAAG1Q9UBP8 84 aa12.37□□□□□ -0.43
NPHP4-211ENST00000622020 ORM1P02763 201 aa12.36□□□□□ -0.43
NPHP4-211ENST00000622020 HOXB4P17483 251 aaPredicted RBP12.36□□□□□ -0.43
NPHP4-211ENST00000622020 C16orf54Q6UWD8 224 aa12.36□□□□□ -0.43
NPHP4-211ENST00000622020 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.36□□□□□ -0.43
NPHP4-211ENST00000622020 FAM104BQ5XKR9 115 aa12.36□□□□□ -0.43
NPHP4-211ENST00000622020 JMJD8Q96S16 334 aa12.36□□□□□ -0.43
NPHP4-211ENST00000622020 SPTAN1Q13813 2472 aaKnown RBP12.35□□□□□ -0.43
NPHP4-211ENST00000622020 GRNP28799 593 aaKnown RBP12.35□□□□□ -0.43
NPHP4-211ENST00000622020 CELSR1Q9NYQ6 3014 aa12.35□□□□□ -0.43
NPHP4-211ENST00000622020 TMEM11P17152 192 aa12.35□□□□□ -0.43
NPHP4-211ENST00000622020 FGF6P10767 208 aa12.35□□□□□ -0.43
NPHP4-211ENST00000622020 GATA1P15976 413 aaPredicted RBP12.35□□□□□ -0.43
NPHP4-211ENST00000622020 COL12A1Q99715 3063 aa12.34□□□□□ -0.43
NPHP4-211ENST00000622020 GOSR1O95249 250 aa12.34□□□□□ -0.43
NPHP4-211ENST00000622020 CLEC2AQ6UVW9 174 aa12.34□□□□□ -0.43
NPHP4-211ENST00000622020 ERCC8Q13216 396 aa12.34□□□□□ -0.43
NPHP4-211ENST00000622020 KIR3DS1Q14943 382 aa12.34□□□□□ -0.43
NPHP4-211ENST00000622020 IGHV3-49A0A0A0MS15 119 aa12.33□□□□□ -0.44
NPHP4-211ENST00000622020 MRPS12O15235 138 aaKnown RBP12.33□□□□□ -0.44
NPHP4-211ENST00000622020 IFI27L1Q96BM0 104 aa12.33□□□□□ -0.44
NPHP4-211ENST00000622020 NBR2O15453 112 aa12.33□□□□□ -0.44
NPHP4-211ENST00000622020 APOBEC3AP31941 199 aaPredicted RBP12.33□□□□□ -0.44
NPHP4-211ENST00000622020 A1L4Q6 167 aa12.32□□□□□ -0.44
NPHP4-211ENST00000622020 HBDP02042 147 aa12.32□□□□□ -0.44
NPHP4-211ENST00000622020 NDPQ00604 133 aa12.32□□□□□ -0.44
NPHP4-211ENST00000622020 FAM90A27PA6NNH2 459 aa12.32□□□□□ -0.44
NPHP4-211ENST00000622020 RNF182Q8N6D2 247 aa12.32□□□□□ -0.44
NPHP4-211ENST00000622020 FER1L6-AS1Q8NA97 138 aa12.32□□□□□ -0.44
NPHP4-211ENST00000622020 PRR25Q96S07 402 aa12.32□□□□□ -0.44
NPHP4-211ENST00000622020 FANCD2OSQ96PS1 177 aa12.31□□□□□ -0.44
NPHP4-211ENST00000622020 FBLL1A6NHQ2 334 aaKnown RBP12.31□□□□□ -0.44
NPHP4-211ENST00000622020 NDUFS7O75251 213 aa12.31□□□□□ -0.44
NPHP4-211ENST00000622020 CD3EP07766 207 aa12.31□□□□□ -0.44
NPHP4-211ENST00000622020 RPS20P60866 119 aaKnown RBP12.31□□□□□ -0.44
NPHP4-211ENST00000622020 TNFRSF14Q92956 283 aa12.31□□□□□ -0.44
NPHP4-211ENST00000622020 SPOCK3Q9BQ16 436 aa12.31□□□□□ -0.44
NPHP4-211ENST00000622020 A0A0G2JLM5 398 aa12.3□□□□□ -0.44
NPHP4-211ENST00000622020 SMAD7O15105 426 aaKnown RBP12.3□□□□□ -0.44
NPHP4-211ENST00000622020 PRSS1P07477 247 aa12.3□□□□□ -0.44
NPHP4-211ENST00000622020 GCSHP23434 173 aa12.3□□□□□ -0.44
NPHP4-211ENST00000622020 Q8NA96 180 aa12.3□□□□□ -0.44
NPHP4-211ENST00000622020 IGKV2D-26A0A0A0MRZ7 120 aa12.3□□□□□ -0.44
NPHP4-211ENST00000622020 PRAC2D3DTV9 90 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms