RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 C5orf51A6NDU8 294 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 FAM25EA8MYX2 175 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 H3BNG1 76 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 RLN2P04090 185 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 IGLC2P0DOY2 106 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 BTF3P20290 206 aaKnown RBP8.35□□□□□ -1.07
UPF3B-204ENST00000619445 M6PRP20645 277 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 RPL29P47914 159 aaKnown RBP8.35□□□□□ -1.07
UPF3B-204ENST00000619445 ARL16Q0P5N6 197 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 OPCMLQ14982 345 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 ATP6V1FQ16864 119 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 TTC32Q5I0X7 151 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 NRARPQ7Z6K4 114 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 C6orf223Q8N319 242 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 ZNF431Q8TF32 576 aaPredicted RBP8.35□□□□□ -1.07
UPF3B-204ENST00000619445 CHAC2Q8WUX2 184 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 C2orf50Q96LR7 162 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 PYGO2Q9BRQ0 406 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 PRELID1Q9Y255 219 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 PKD1P98161 4303 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 DNAH11Q96DT5 4516 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 PCLOQ9Y6V0 5065 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 MPDU1O75352 247 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 TCRBP04435 133 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 PRM2P04554 102 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 SULT1A1P50225 295 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 PDE6HQ13956 83 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 VWC2Q2TAL6 325 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 GFI1BQ5VTD9 330 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 LINC00612Q8N6U2 182 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 ZNF680Q8NEM1 530 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 GNPNAT1Q96EK6 184 aaPredicted RBP8.35□□□□□ -1.07
UPF3B-204ENST00000619445 SAT2Q96F10 170 aaPredicted RBP8.35□□□□□ -1.07
UPF3B-204ENST00000619445 WDR83OSQ9Y284 106 aa8.35□□□□□ -1.07
UPF3B-204ENST00000619445 LSM5Q9Y4Y9 91 aaKnown RBP8.35□□□□□ -1.07
UPF3B-204ENST00000619445 NPIPB6E9PJ23 425 aa8.34□□□□□ -1.07
UPF3B-204ENST00000619445 CST7O76096 145 aa8.34□□□□□ -1.07
UPF3B-204ENST00000619445 SLC25A5P05141 298 aaKnown RBP8.34□□□□□ -1.07
UPF3B-204ENST00000619445 DAZ2Q13117 558 aaKnown RBP8.34□□□□□ -1.07
UPF3B-204ENST00000619445 FCN2Q15485 313 aa8.34□□□□□ -1.07
UPF3B-204ENST00000619445 RXFP4Q8TDU9 374 aa8.34□□□□□ -1.07
UPF3B-204ENST00000619445 RNF141Q8WVD5 230 aa8.34□□□□□ -1.07
UPF3B-204ENST00000619445 CCDC32Q9BV29 185 aa8.34□□□□□ -1.07
UPF3B-204ENST00000619445 LYRM2Q9NU23 88 aaPredicted RBP8.34□□□□□ -1.07
UPF3B-204ENST00000619445 SLC39A9Q9NUM3 307 aa8.34□□□□□ -1.07
UPF3B-204ENST00000619445 NUDT15Q9NV35 164 aa8.34□□□□□ -1.07
UPF3B-204ENST00000619445 TMEM14CQ9P0S9 112 aa8.34□□□□□ -1.07
UPF3B-204ENST00000619445 A0A1W2PPQ1 181 aa8.33□□□□□ -1.08
UPF3B-204ENST00000619445 H3BQ15 152 aa8.33□□□□□ -1.08
UPF3B-204ENST00000619445 SLC17A3O00476 420 aa8.33□□□□□ -1.08
UPF3B-204ENST00000619445 CCSO14618 274 aa8.33□□□□□ -1.08
UPF3B-204ENST00000619445 PLA2G10O15496 165 aa8.33□□□□□ -1.08
UPF3B-204ENST00000619445 BAXQ07812 192 aa8.33□□□□□ -1.08
UPF3B-204ENST00000619445 OR5I1Q13606 314 aa8.33□□□□□ -1.08
UPF3B-204ENST00000619445 MIC13Q5XKP0 118 aa8.33□□□□□ -1.08
UPF3B-204ENST00000619445 LINC00299Q6ZSB3 139 aa8.33□□□□□ -1.08
UPF3B-204ENST00000619445 SSX7Q7RTT5 188 aa8.33□□□□□ -1.08
UPF3B-204ENST00000619445 LINC00477Q96M19 166 aa8.33□□□□□ -1.08
UPF3B-204ENST00000619445 LINC00588Q9Y4M8 146 aa8.33□□□□□ -1.08
UPF3B-204ENST00000619445 TRBV19A0A075B6N1 114 aa8.32□□□□□ -1.08
UPF3B-204ENST00000619445 TRAV6A0A075B6T7 132 aa8.32□□□□□ -1.08
UPF3B-204ENST00000619445 TRAV26-1A0A087WT03 109 aa8.32□□□□□ -1.08
UPF3B-204ENST00000619445 NMBP08949 121 aa8.32□□□□□ -1.08
UPF3B-204ENST00000619445 HIST1H1EP10412 219 aaKnown RBP8.32□□□□□ -1.08
UPF3B-204ENST00000619445 S100A10P60903 97 aa8.32□□□□□ -1.08
UPF3B-204ENST00000619445 C18orf15Q96N68 181 aa8.32□□□□□ -1.08
UPF3B-204ENST00000619445 LINC00467Q9BRT7 94 aa8.32□□□□□ -1.08
UPF3B-204ENST00000619445 UPK3BQ9BT76 320 aa8.32□□□□□ -1.08
UPF3B-204ENST00000619445 AAMDCQ9H7C9 122 aa8.32□□□□□ -1.08
UPF3B-204ENST00000619445 Q9H8V8 135 aa8.32□□□□□ -1.08
UPF3B-204ENST00000619445 KCNIP2Q9NS61 270 aa8.32□□□□□ -1.08
UPF3B-204ENST00000619445 UBE2L5PA0A1B0GUS4 154 aa8.31□□□□□ -1.08
UPF3B-204ENST00000619445 FAM240BA0A1B0GVZ2 78 aa8.31□□□□□ -1.08
UPF3B-204ENST00000619445 FAM24AA6NFZ4 105 aa8.31□□□□□ -1.08
UPF3B-204ENST00000619445 PRAC2D3DTV9 90 aa8.31□□□□□ -1.08
UPF3B-204ENST00000619445 H2AFB2P0C5Z0 115 aa8.31□□□□□ -1.08
UPF3B-204ENST00000619445 CT45A10P0DMU9 189 aa8.31□□□□□ -1.08
UPF3B-204ENST00000619445 MORN5Q5VZ52 161 aa8.31□□□□□ -1.08
UPF3B-204ENST00000619445 MZT2BQ6NZ67 158 aa8.31□□□□□ -1.08
UPF3B-204ENST00000619445 TMEM252Q8N6L7 170 aa8.31□□□□□ -1.08
UPF3B-204ENST00000619445 C11orf1Q9H5F2 150 aa8.31□□□□□ -1.08
UPF3B-204ENST00000619445 TIMM9Q9Y5J7 89 aa8.31□□□□□ -1.08
UPF3B-204ENST00000619445 TRAV12-3A0A0B4J271 114 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 GAGE12BA1L429 117 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 C7orf71A4D174 169 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 C16orf90A8MZG2 172 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 H3BTX0 84 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 CDK2AP2O75956 126 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 GAGE7O76087 117 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 SNRPCP09234 159 aaKnown RBP8.3□□□□□ -1.08
UPF3B-204ENST00000619445 GAGE12FP0CL80 117 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 GAGE12GP0CL81 117 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 GAGE12IP0CL82 117 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 ANXA2RQ3ZCQ2 193 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 SEC22CQ9BRL7 303 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 SLC25A31Q9H0C2 315 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 Q9H3A6 140 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 ZNF586Q9NXT0 402 aa8.3□□□□□ -1.08
UPF3B-204ENST00000619445 DYNC1H1Q14204 4646 aaKnown RBP8.29□□□□□ -1.08
UPF3B-204ENST00000619445 TRGV2A0A075B6R0 118 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms