RNA–Protein interactions for RNA: ENST00000579780.5

CDK5RAP3-215, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 3

Gene CDK5RAP3, Length 611 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-215	ENST00000579780	IZUMO1R	A6ND01	250 aa		12.52	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780		M0R3E3	92 aa		12.52	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	CSN1S1	P47710	185 aa		12.52	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	TFPI2	P48307	235 aa		12.52	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	SRSF3	P84103	164 aa	Known RBP	12.52	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	ATG101	Q9BSB4	218 aa		12.52	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	ZNF256	Q9Y2P7	627 aa	Predicted RBP	12.52	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	TRRAP	Q9Y4A5	3859 aa		12.52	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	SCO2	A0A1W2PP80	73 aa		12.51	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	PEX7	O00628	323 aa		12.51	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	TCRA	P04437	139 aa		12.51	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	SRP19	P09132	144 aa	Known RBP	12.51	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	HLA-DMB	P28068	263 aa		12.51	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	PSG3	Q16557	428 aa		12.51	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	GUCA2B	Q16661	112 aa		12.51	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	IGFL4	Q6B9Z1	124 aa		12.51	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	WFDC3	Q8IUB2	231 aa		12.51	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	FAM24B	Q8N5W8	94 aa		12.51	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	RNF182	Q8N6D2	247 aa		12.51	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	C20orf173	Q96LM9	149 aa		12.51	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	EPDR1	Q9UM22	224 aa		12.51	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	DIRC3	C9JPN6	131 aa		12.5	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	ZNF688	P0C7X2	276 aa		12.5	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	IGLL1	P15814	213 aa		12.5	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	GNG5	P63218	68 aa		12.5	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	CYB561D1	Q8N8Q1	229 aa		12.5	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	ZNF738	Q8NE65	137 aa		12.5	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	RPUSD4	Q96CM3	377 aa	Known RBP	12.5	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	TREM1	Q9NP99	234 aa		12.5	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	CMYA5	Q8N3K9	4069 aa		12.5	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	AKR1C3	P42330	323 aa		12.49	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	BEAN1	Q3B7T3	259 aa		12.49	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	PSMG4	Q5JS54	123 aa		12.49	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	C2CD4C	Q8TF44	421 aa		12.49	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	FAM110A	Q9BQ89	295 aa		12.49	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	SLC35B3	Q9H1N7	401 aa		12.49	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	MAP6D1	Q9H9H5	199 aa		12.49	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	RBAKDN	A6NC62	111 aa		12.48	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780		C9JQL5	133 aa		12.48	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780		K7EQM0	130 aa		12.48	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	LINC00052	Q96N35	136 aa		12.48	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	RPH3AL	Q9UNE2	315 aa		12.48	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	FBLL1	A6NHQ2	334 aa	Known RBP	12.47	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	CNN1	P51911	297 aa	Known RBP	12.47	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	CMC4	P56277	68 aa	Predicted RBP	12.47	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	ODF3L2	Q3SX64	289 aa		12.47	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	GOLT1A	Q6ZVE7	132 aa		12.47	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	TMEM75	Q8N9X5	138 aa		12.47	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	ZNF705F	A8MVS1	300 aa	Predicted RBP	12.46	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	SFTA3	P0C7M3	94 aa		12.46	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	FOXI2	Q6ZQN5	318 aa		12.46	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	SLC7A5P1	Q8MH63	180 aa		12.46	□□□□□ -0.41
CDK5RAP3-215	ENST00000579780	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	TRBV6-1	A0A0K0K1D8	114 aa		12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	OR11H12	B2RN74	326 aa		12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	PRAC2	D3DTV9	90 aa		12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	IGKV2D-40	P01614	121 aa	Predicted RBP	12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	S100A9	P06702	114 aa	Known RBP	12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	DEFB131A	P59861	70 aa		12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	UBE2G1	P62253	170 aa		12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	TMEM183B	Q1AE95	376 aa		12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	OR8A1	Q8NGG7	326 aa		12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	FMC1	Q96HJ9	113 aa		12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	CITED4	Q96RK1	184 aa		12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	PARL	Q9H300	379 aa		12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	KLF12	Q9Y4X4	402 aa		12.45	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	NOTCH3	Q9UM47	2321 aa		12.44	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	TMEM218	A2RU14	115 aa		12.44	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	NPIPB6	E9PJ23	425 aa		12.44	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	RPL35	P42766	123 aa	Known RBP	12.44	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	FAM74A3	Q4VXF1	159 aa		12.44	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	C9orf47	Q6ZRZ4	202 aa		12.44	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780		Q86TA4	180 aa		12.44	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	OR10J6P	Q8NGY7	276 aa		12.44	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	DERL1	Q9BUN8	251 aa		12.44	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	SAV1	Q9H4B6	383 aa	Predicted RBP	12.44	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	ZMAT5	Q9UDW3	170 aa	Known RBP	12.44	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780		A0A0J9YX75	114 aa		12.43	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780		C9JCJ5	164 aa		12.43	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	IGLV2-11	P01706	119 aa		12.43	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	CEBPG	P53567	150 aa		12.43	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	TAS2R60	P59551	318 aa		12.43	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	FLI1	Q01543	452 aa	Predicted RBP	12.43	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	EGFEM1P	Q0D2K5	195 aa		12.43	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	SOHLH1	Q5JUK2	328 aa		12.43	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	GTSCR1	Q86UQ5	136 aa		12.43	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	IGF2BP2-AS1	Q96M15	143 aa		12.43	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	SMIM7	Q9BQ49	75 aa		12.43	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	SORL1	Q92673	2214 aa		12.42	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	TRAV8-1	A0A0A6YYK1	113 aa		12.42	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	DUSP14	O95147	198 aa	Known RBP	12.42	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	HLA-DRB4	P13762	266 aa		12.42	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	HIST1H1A	Q02539	215 aa	Predicted RBP	12.42	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	TMEM78	Q5T7P6	136 aa		12.42	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	SAMD5	Q5TGI4	173 aa		12.42	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	EBLN2	Q6P2I7	272 aa		12.42	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	SEC11C	Q9BY50	192 aa		12.42	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	C19orf73	Q9NVV2	129 aa		12.42	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	PPP1R14D	Q9NXH3	145 aa		12.42	□□□□□ -0.42
CDK5RAP3-215	ENST00000579780	HLA-DRB4	X5D2U9	266 aa		12.42	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms