RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 EIF4E3Q8N5X7 224 aaKnown RBP8.05□□□□□ -1.12
SS18-213ENST00000579640 HIST1H2BAQ96A08 127 aa8.05□□□□□ -1.12
SS18-213ENST00000579640 ANK2Q01484 3957 aa8.04□□□□□ -1.12
SS18-213ENST00000579640 SERTM2A0A1B0GWG4 89 aa8.04□□□□□ -1.12
SS18-213ENST00000579640 IZUMO1RA6ND01 250 aa8.04□□□□□ -1.12
SS18-213ENST00000579640 RPUSD4Q96CM3 377 aaKnown RBP8.04□□□□□ -1.12
SS18-213ENST00000579640 EPDR1Q9UM22 224 aa8.04□□□□□ -1.12
SS18-213ENST00000579640 ZNF256Q9Y2P7 627 aaPredicted RBP8.04□□□□□ -1.12
SS18-213ENST00000579640 TMEM250H0YL14 139 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 RNF182Q8N6D2 247 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 ZNF738Q8NE65 137 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 C11orf52Q96A22 123 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 LINC00052Q96N35 136 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 FAM110AQ9BQ89 295 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 ATG101Q9BSB4 218 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 ZMAT5Q9UDW3 170 aaKnown RBP8.03□□□□□ -1.12
SS18-213ENST00000579640 DIRC3C9JPN6 131 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 K7EQM0 130 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 M0R3E3 92 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 PEX7O00628 323 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 TCRAP04437 139 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 ZNF688P0C7X2 276 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 HLA-DMBP28068 263 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 BEAN1Q3B7T3 259 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 PSMG4Q5JS54 123 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 IGFL4Q6B9Z1 124 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 C20orf173Q96LM9 149 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 TREM1Q9NP99 234 aa8.03□□□□□ -1.12
SS18-213ENST00000579640 RBAKDNA6NC62 111 aa8.02□□□□□ -1.13
SS18-213ENST00000579640 SRP19P09132 144 aaKnown RBP8.02□□□□□ -1.13
SS18-213ENST00000579640 SRSF3P84103 164 aaKnown RBP8.02□□□□□ -1.13
SS18-213ENST00000579640 FAM24BQ8N5W8 94 aa8.02□□□□□ -1.13
SS18-213ENST00000579640 CYB561D1Q8N8Q1 229 aa8.02□□□□□ -1.13
SS18-213ENST00000579640 SLC35B3Q9H1N7 401 aa8.02□□□□□ -1.13
SS18-213ENST00000579640 SCO2A0A1W2PP80 73 aa8.01□□□□□ -1.13
SS18-213ENST00000579640 FBLL1A6NHQ2 334 aaKnown RBP8.01□□□□□ -1.13
SS18-213ENST00000579640 ZNF705FA8MVS1 300 aaPredicted RBP8.01□□□□□ -1.13
SS18-213ENST00000579640 S100A9P06702 114 aaKnown RBP8.01□□□□□ -1.13
SS18-213ENST00000579640 AKR1C3P42330 323 aa8.01□□□□□ -1.13
SS18-213ENST00000579640 GNG5P63218 68 aa8.01□□□□□ -1.13
SS18-213ENST00000579640 MAP6D1Q9H9H5 199 aa8.01□□□□□ -1.13
SS18-213ENST00000579640 RPH3ALQ9UNE2 315 aa8.01□□□□□ -1.13
SS18-213ENST00000579640 OR11H12B2RN74 326 aa8.01□□□□□ -1.13
SS18-213ENST00000579640 CNN1P51911 297 aaKnown RBP8.01□□□□□ -1.13
SS18-213ENST00000579640 DEFB131AP59861 70 aa8.01□□□□□ -1.13
SS18-213ENST00000579640 EBLN2Q6P2I7 272 aa8.01□□□□□ -1.13
SS18-213ENST00000579640 FOXI2Q6ZQN5 318 aa8.01□□□□□ -1.13
SS18-213ENST00000579640 GOLT1AQ6ZVE7 132 aa8.01□□□□□ -1.13
SS18-213ENST00000579640 TMEM75Q8N9X5 138 aa8.01□□□□□ -1.13
SS18-213ENST00000579640 C2CD4CQ8TF44 421 aa8.01□□□□□ -1.13
SS18-213ENST00000579640 VWFP04275 2813 aa8□□□□□ -1.13
SS18-213ENST00000579640 TRRAPQ9Y4A5 3859 aa8□□□□□ -1.13
SS18-213ENST00000579640 C9JQL5 133 aa8□□□□□ -1.13
SS18-213ENST00000579640 ODF3L2Q3SX64 289 aa8□□□□□ -1.13
SS18-213ENST00000579640 GTSCR1Q86UQ5 136 aa8□□□□□ -1.13
SS18-213ENST00000579640 OR8A1Q8NGG7 326 aa8□□□□□ -1.13
SS18-213ENST00000579640 OR10J6PQ8NGY7 276 aa8□□□□□ -1.13
SS18-213ENST00000579640 FMC1Q96HJ9 113 aa8□□□□□ -1.13
SS18-213ENST00000579640 KLF12Q9Y4X4 402 aa8□□□□□ -1.13
SS18-213ENST00000579640 TRBV6-1A0A0K0K1D8 114 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 PRAC2D3DTV9 90 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 DUSP14O95147 198 aaKnown RBP7.99□□□□□ -1.13
SS18-213ENST00000579640 TAS2R60P59551 318 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 UBE2G1P62253 170 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 EGFEM1PQ0D2K5 195 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 TMEM183BQ1AE95 376 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 FAM74A3Q4VXF1 159 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 OXLD1Q5BKU9 147 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 SAV1Q9H4B6 383 aaPredicted RBP7.99□□□□□ -1.13
SS18-213ENST00000579640 IGKV2-40A0A087WW87 121 aaPredicted RBP7.99□□□□□ -1.13
SS18-213ENST00000579640 A0A0J9YX75 114 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 IGKV2D-40P01614 121 aaPredicted RBP7.99□□□□□ -1.13
SS18-213ENST00000579640 SFTA3P0C7M3 94 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 CEBPGP53567 150 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 SOHLH1Q5JUK2 328 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 C9orf47Q6ZRZ4 202 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 SLC7A5P1Q8MH63 180 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 LINC00477Q96M19 166 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 CITED4Q96RK1 184 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 PARLQ9H300 379 aa7.99□□□□□ -1.13
SS18-213ENST00000579640 NOTCH3Q9UM47 2321 aa7.98□□□□□ -1.13
SS18-213ENST00000579640 TMEM218A2RU14 115 aa7.98□□□□□ -1.13
SS18-213ENST00000579640 NPIPB6E9PJ23 425 aa7.98□□□□□ -1.13
SS18-213ENST00000579640 CD7P09564 240 aa7.98□□□□□ -1.13
SS18-213ENST00000579640 RPL35P42766 123 aaKnown RBP7.98□□□□□ -1.13
SS18-213ENST00000579640 FLI1Q01543 452 aaPredicted RBP7.98□□□□□ -1.13
SS18-213ENST00000579640 HIST1H1AQ02539 215 aaPredicted RBP7.98□□□□□ -1.13
SS18-213ENST00000579640 TMEM78Q5T7P6 136 aa7.98□□□□□ -1.13
SS18-213ENST00000579640 SAMD5Q5TGI4 173 aa7.98□□□□□ -1.13
SS18-213ENST00000579640 C19orf73Q9NVV2 129 aa7.98□□□□□ -1.13
SS18-213ENST00000579640 PPP1R14DQ9NXH3 145 aa7.98□□□□□ -1.13
SS18-213ENST00000579640 SORL1Q92673 2214 aa7.97□□□□□ -1.13
SS18-213ENST00000579640 C9JCJ5 164 aa7.97□□□□□ -1.13
SS18-213ENST00000579640 IGLV2-11P01706 119 aa7.97□□□□□ -1.13
SS18-213ENST00000579640 HLA-DRB4P13762 266 aa7.97□□□□□ -1.13
SS18-213ENST00000579640 ZNF674Q2M3X9 581 aa7.97□□□□□ -1.13
SS18-213ENST00000579640 LINC00479Q96M42 142 aa7.97□□□□□ -1.13
SS18-213ENST00000579640 VGLL1Q99990 258 aa7.97□□□□□ -1.13
SS18-213ENST00000579640 SMIM7Q9BQ49 75 aa7.97□□□□□ -1.13
SS18-213ENST00000579640 PSG8Q9UQ74 426 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms