RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 SOCS3O14543 225 aa18.08■□□□□ 0.48
ATPAF1-213ENST00000574428 PRB4P10163 310 aaPredicted RBP18.08■□□□□ 0.48
ATPAF1-213ENST00000574428 RBPMS2Q6ZRY4 209 aaKnown RBP18.08■□□□□ 0.48
ATPAF1-213ENST00000574428 RNF182Q8N6D2 247 aa18.08■□□□□ 0.48
ATPAF1-213ENST00000574428 RPUSD4Q96CM3 377 aaKnown RBP18.08■□□□□ 0.48
ATPAF1-213ENST00000574428 C16orf92Q96LL3 132 aa18.08■□□□□ 0.48
ATPAF1-213ENST00000574428 SLC50A1Q9BRV3 221 aa18.08■□□□□ 0.48
ATPAF1-213ENST00000574428 LYPD1Q8N2G4 141 aa18.07■□□□□ 0.48
ATPAF1-213ENST00000574428 DCANP1Q8TF63 244 aa18.07■□□□□ 0.48
ATPAF1-213ENST00000574428 SMIM7Q9BQ49 75 aa18.07■□□□□ 0.48
ATPAF1-213ENST00000574428 PARLQ9H300 379 aa18.07■□□□□ 0.48
ATPAF1-213ENST00000574428 AAMDCQ9H7C9 122 aa18.07■□□□□ 0.48
ATPAF1-213ENST00000574428 IZUMO1RA6ND01 250 aa18.07■□□□□ 0.48
ATPAF1-213ENST00000574428 PDE6DO43924 150 aa18.07■□□□□ 0.48
ATPAF1-213ENST00000574428 ZNF674Q2M3X9 581 aa18.07■□□□□ 0.48
ATPAF1-213ENST00000574428 SMCO4Q9NRQ5 59 aa18.07■□□□□ 0.48
ATPAF1-213ENST00000574428 M0R3E3 92 aa18.06■□□□□ 0.48
ATPAF1-213ENST00000574428 SLC25A5P05141 298 aaKnown RBP18.06■□□□□ 0.48
ATPAF1-213ENST00000574428 CD33P20138 364 aa18.06■□□□□ 0.48
ATPAF1-213ENST00000574428 GNG5P63218 68 aa18.06■□□□□ 0.48
ATPAF1-213ENST00000574428 TXNDC17Q9BRA2 123 aa18.06■□□□□ 0.48
ATPAF1-213ENST00000574428 RPH3ALQ9UNE2 315 aa18.06■□□□□ 0.48
ATPAF1-213ENST00000574428 SCO2A0A1W2PP80 73 aa18.05■□□□□ 0.48
ATPAF1-213ENST00000574428 SDF2L1Q9HCN8 221 aa18.05■□□□□ 0.48
ATPAF1-213ENST00000574428 F6UZH7 168 aa18.04■□□□□ 0.48
ATPAF1-213ENST00000574428 IGLV1-51P01701 117 aa18.04■□□□□ 0.48
ATPAF1-213ENST00000574428 RIPPLY3P57055 190 aa18.04■□□□□ 0.48
ATPAF1-213ENST00000574428 K7EQG2 157 aa18.04■□□□□ 0.48
ATPAF1-213ENST00000574428 PAFAH1B2P68402 229 aa18.04■□□□□ 0.48
ATPAF1-213ENST00000574428 PNRC1Q12796 327 aaPredicted RBP18.04■□□□□ 0.48
ATPAF1-213ENST00000574428 FAM24BQ8N5W8 94 aa18.04■□□□□ 0.48
ATPAF1-213ENST00000574428 C5orf17Q8NAS9 161 aa18.04■□□□□ 0.48
ATPAF1-213ENST00000574428 CMTM2Q8TAZ6 248 aa18.04■□□□□ 0.48
ATPAF1-213ENST00000574428 C20orf173Q96LM9 149 aa18.04■□□□□ 0.48
ATPAF1-213ENST00000574428 NAT8Q9UHE5 227 aa18.04■□□□□ 0.48
ATPAF1-213ENST00000574428 ZNF705FA8MVS1 300 aaPredicted RBP18.03■□□□□ 0.48
ATPAF1-213ENST00000574428 ISLRO14498 428 aa18.03■□□□□ 0.48
ATPAF1-213ENST00000574428 WFDC9Q8NEX5 89 aa18.02■□□□□ 0.48
ATPAF1-213ENST00000574428 EPDR1Q9UM22 224 aa18.02■□□□□ 0.48
ATPAF1-213ENST00000574428 TRRAPQ9Y4A5 3859 aa18.02■□□□□ 0.47
ATPAF1-213ENST00000574428 TRAV25A0A0B4J276 109 aa18.02■□□□□ 0.47
ATPAF1-213ENST00000574428 A0A087WWC5 75 aa18.01■□□□□ 0.47
ATPAF1-213ENST00000574428 PEX7O00628 323 aa18.01■□□□□ 0.47
ATPAF1-213ENST00000574428 TMEM241Q24JQ0 296 aa18.01■□□□□ 0.47
ATPAF1-213ENST00000574428 SAMD13Q5VXD3 122 aa18.01■□□□□ 0.47
ATPAF1-213ENST00000574428 B4DEV8 164 aa18■□□□□ 0.47
ATPAF1-213ENST00000574428 ZNF688P0C7X2 276 aa18■□□□□ 0.47
ATPAF1-213ENST00000574428 ID1P41134 155 aa18■□□□□ 0.47
ATPAF1-213ENST00000574428 PSG3Q16557 428 aa18■□□□□ 0.47
ATPAF1-213ENST00000574428 C9orf66Q5T8R8 295 aa18■□□□□ 0.47
ATPAF1-213ENST00000574428 LCN12Q6JVE5 192 aa18■□□□□ 0.47
ATPAF1-213ENST00000574428 C11orf52Q96A22 123 aa18■□□□□ 0.47
ATPAF1-213ENST00000574428 ISOC2Q96AB3 205 aa18■□□□□ 0.47
ATPAF1-213ENST00000574428 SPAG8Q99932 426 aaPredicted RBP18■□□□□ 0.47
ATPAF1-213ENST00000574428 TUBA4BQ9H853 241 aa18■□□□□ 0.47
ATPAF1-213ENST00000574428 TCRAP04437 139 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 DERL1Q9BUN8 251 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 ANK2Q01484 3957 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 COLCA2A8K830 154 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 PRAC2D3DTV9 90 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 IGLL1P15814 213 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 CSN1S1P47710 185 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 GOLT1AQ6ZVE7 132 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 C15orf54Q8N8G6 183 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 ZNF738Q8NE65 137 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 LINC00479Q96M42 142 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 TCEAL7Q9BRU2 100 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 ATG101Q9BSB4 218 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 PRELID1Q9Y255 219 aa17.99■□□□□ 0.47
ATPAF1-213ENST00000574428 TRAV2A0A0B4J234 112 aa17.98■□□□□ 0.47
ATPAF1-213ENST00000574428 DIRC3C9JPN6 131 aa17.98■□□□□ 0.47
ATPAF1-213ENST00000574428 RPL23P62829 140 aaKnown RBP17.98■□□□□ 0.47
ATPAF1-213ENST00000574428 ADIRFQ15847 76 aa17.98■□□□□ 0.47
ATPAF1-213ENST00000574428 PSMG4Q5JS54 123 aa17.98■□□□□ 0.47
ATPAF1-213ENST00000574428 OR2K2Q8NGT1 345 aa17.98■□□□□ 0.47
ATPAF1-213ENST00000574428 HIST1H2BAQ96A08 127 aa17.98■□□□□ 0.47
ATPAF1-213ENST00000574428 MCRIP2Q9BUT9 160 aaKnown RBP17.98■□□□□ 0.47
ATPAF1-213ENST00000574428 ZNF256Q9Y2P7 627 aaPredicted RBP17.98■□□□□ 0.47
ATPAF1-213ENST00000574428 OR4C46A6NHA9 309 aa17.97■□□□□ 0.47
ATPAF1-213ENST00000574428 INSL3P51460 131 aa17.97■□□□□ 0.47
ATPAF1-213ENST00000574428 DEFB1P60022 68 aa17.97■□□□□ 0.47
ATPAF1-213ENST00000574428 SNRPD3P62318 126 aaKnown RBP17.97■□□□□ 0.47
ATPAF1-213ENST00000574428 C2CD4CQ8TF44 421 aa17.97■□□□□ 0.47
ATPAF1-213ENST00000574428 CLEC5AQ9NY25 188 aa17.97■□□□□ 0.47
ATPAF1-213ENST00000574428 IGKV2-40A0A087WW87 121 aaPredicted RBP17.96■□□□□ 0.47
ATPAF1-213ENST00000574428 IGKV2D-40P01614 121 aaPredicted RBP17.96■□□□□ 0.47
ATPAF1-213ENST00000574428 MRPL53Q96EL3 112 aaKnown RBP17.96■□□□□ 0.47
ATPAF1-213ENST00000574428 TRAV34A0A0B4J273 112 aa17.96■□□□□ 0.47
ATPAF1-213ENST00000574428 SGK494Q96LW2 274 aa17.96■□□□□ 0.47
ATPAF1-213ENST00000574428 TRAV8-1A0A0A6YYK1 113 aa17.94■□□□□ 0.46
ATPAF1-213ENST00000574428 RPL35P42766 123 aaKnown RBP17.94■□□□□ 0.46
ATPAF1-213ENST00000574428 RNF212Q495C1 297 aa17.94■□□□□ 0.46
ATPAF1-213ENST00000574428 YPEL4Q96NS1 127 aa17.94■□□□□ 0.46
ATPAF1-213ENST00000574428 F6UB75 175 aa17.93■□□□□ 0.46
ATPAF1-213ENST00000574428 ZNF705DP0CH99 300 aaPredicted RBP17.93■□□□□ 0.46
ATPAF1-213ENST00000574428 ZNF705BP0CI00 300 aaPredicted RBP17.93■□□□□ 0.46
ATPAF1-213ENST00000574428 CNN1P51911 297 aaKnown RBP17.93■□□□□ 0.46
ATPAF1-213ENST00000574428 ARL6IP6Q8N6S5 226 aa17.93■□□□□ 0.46
ATPAF1-213ENST00000574428 TRBV20OR9-2A0A075B6H5 130 aa17.92■□□□□ 0.46
ATPAF1-213ENST00000574428 VGLL1Q99990 258 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 135.1 ms