RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 APRG1Q8IVJ8 170 aa7.16□□□□□ -1.26
CUX1-216ENST00000558469 ZNF738Q8NE65 137 aa7.16□□□□□ -1.26
CUX1-216ENST00000558469 MAP6D1Q9H9H5 199 aa7.16□□□□□ -1.26
CUX1-216ENST00000558469 FAM74A7A6NL05 159 aa7.15□□□□□ -1.26
CUX1-216ENST00000558469 M0R3E3 92 aa7.15□□□□□ -1.26
CUX1-216ENST00000558469 IFNA1P01562 189 aa7.15□□□□□ -1.26
CUX1-216ENST00000558469 SLC25A5P05141 298 aaKnown RBP7.15□□□□□ -1.26
CUX1-216ENST00000558469 CMC4P56277 68 aaPredicted RBP7.15□□□□□ -1.26
CUX1-216ENST00000558469 DEFB1P60022 68 aa7.15□□□□□ -1.26
CUX1-216ENST00000558469 ZNF124Q15973 351 aa7.15□□□□□ -1.26
CUX1-216ENST00000558469 HAGHQ16775 308 aa7.15□□□□□ -1.26
CUX1-216ENST00000558469 ODF3L2Q3SX64 289 aa7.15□□□□□ -1.26
CUX1-216ENST00000558469 MANBALQ9NQG1 85 aa7.15□□□□□ -1.26
CUX1-216ENST00000558469 OTORQ9NRC9 128 aa7.15□□□□□ -1.26
CUX1-216ENST00000558469 CLEC5AQ9NY25 188 aa7.15□□□□□ -1.26
CUX1-216ENST00000558469 PRELID1Q9Y255 219 aa7.15□□□□□ -1.26
CUX1-216ENST00000558469 GGTLC3B5MD39 225 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 RGS13O14921 159 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 CSN1S1P47710 185 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 PMS2P11Q13670 270 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 MGAM2Q2M2H8 2515 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 CLLU1Q5K131 121 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 NBEAL1Q6ZS30 2694 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 DEFB125Q8N687 156 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 CMTM2Q8TAZ6 248 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 RPUSD4Q96CM3 377 aaKnown RBP7.14□□□□□ -1.27
CUX1-216ENST00000558469 NKX6-2Q9C056 277 aaPredicted RBP7.14□□□□□ -1.27
CUX1-216ENST00000558469 WFDC10AQ9H1F0 79 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 C19orf73Q9NVV2 129 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 RPH3ALQ9UNE2 315 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 ARL2-SNX15V9GYD0 113 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 NOTCH1P46531 2555 aa7.14□□□□□ -1.27
CUX1-216ENST00000558469 RBFOX3A6NFN3 312 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 KNCNA6PVL3 124 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 C11orf94C9JXX5 98 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 PRAC2D3DTV9 90 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 F6UB75 175 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 PRB2P02812 416 aaPredicted RBP7.13□□□□□ -1.27
CUX1-216ENST00000558469 ZNF705DP0CH99 300 aaPredicted RBP7.13□□□□□ -1.27
CUX1-216ENST00000558469 ZNF705BP0CI00 300 aaPredicted RBP7.13□□□□□ -1.27
CUX1-216ENST00000558469 BCL2P10415 239 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 ATP5G3P48201 142 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 GNG5P63218 68 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 ACTL10Q5JWF8 245 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 KPRPQ5T749 579 aaPredicted RBP7.13□□□□□ -1.27
CUX1-216ENST00000558469 GDF5OSQ5U4N7 250 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 EBLN2Q6P2I7 272 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 Q8N1Y9 231 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 RXFP4Q8TDU9 374 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 MRPL53Q96EL3 112 aaKnown RBP7.13□□□□□ -1.27
CUX1-216ENST00000558469 RARRES2Q99969 163 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 FAM110AQ9BQ89 295 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 EIF5A2Q9GZV4 153 aaKnown RBP7.13□□□□□ -1.27
CUX1-216ENST00000558469 EPDR1Q9UM22 224 aa7.13□□□□□ -1.27
CUX1-216ENST00000558469 LOC102723971A0A1B0GUV8 181 aa7.12□□□□□ -1.27
CUX1-216ENST00000558469 DIRC3C9JPN6 131 aa7.12□□□□□ -1.27
CUX1-216ENST00000558469 TAGLN2P37802 199 aaKnown RBP7.12□□□□□ -1.27
CUX1-216ENST00000558469 MEF2BQ02080 365 aaPredicted RBP7.12□□□□□ -1.27
CUX1-216ENST00000558469 HIST1H1AQ02539 215 aaPredicted RBP7.12□□□□□ -1.27
CUX1-216ENST00000558469 FOXI2Q6ZQN5 318 aa7.12□□□□□ -1.27
CUX1-216ENST00000558469 CCDC28AQ8IWP9 274 aa7.12□□□□□ -1.27
CUX1-216ENST00000558469 C5orf17Q8NAS9 161 aa7.12□□□□□ -1.27
CUX1-216ENST00000558469 FAM210AQ96ND0 272 aa7.12□□□□□ -1.27
CUX1-216ENST00000558469 CITED4Q96RK1 184 aa7.12□□□□□ -1.27
CUX1-216ENST00000558469 SAV1Q9H4B6 383 aaPredicted RBP7.12□□□□□ -1.27
CUX1-216ENST00000558469 VAX2Q9UIW0 290 aa7.12□□□□□ -1.27
CUX1-216ENST00000558469 DNAH3Q8TD57 4116 aa7.12□□□□□ -1.27
CUX1-216ENST00000558469 IGKV2-40A0A087WW87 121 aaPredicted RBP7.11□□□□□ -1.27
CUX1-216ENST00000558469 A0A0J9YX75 114 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 IGKV2D-40P01614 121 aaPredicted RBP7.11□□□□□ -1.27
CUX1-216ENST00000558469 IGKV3-20P01619 116 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 TCRAP04437 139 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 ERCC8Q13216 396 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 TOR2AQ5JU69 321 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 ZNF506Q5JVG8 444 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 GOLT1AQ6ZVE7 132 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 STHQ8IWL8 128 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 ARL6IP6Q8N6S5 226 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 OR4B1Q8NGF8 309 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 OR8A1Q8NGG7 326 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 OR10J6PQ8NGY7 276 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 TXNDC17Q9BRA2 123 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 SRD5A3Q9H8P0 318 aa7.11□□□□□ -1.27
CUX1-216ENST00000558469 AURKAIP1Q9NWT8 199 aaPredicted RBP7.11□□□□□ -1.27
CUX1-216ENST00000558469 SCO2A0A1W2PP80 73 aa7.1□□□□□ -1.27
CUX1-216ENST00000558469 F6UZH7 168 aa7.1□□□□□ -1.27
CUX1-216ENST00000558469 H3BMM0 161 aa7.1□□□□□ -1.27
CUX1-216ENST00000558469 K7EQM0 130 aa7.1□□□□□ -1.27
CUX1-216ENST00000558469 PEX7O00628 323 aa7.1□□□□□ -1.27
CUX1-216ENST00000558469 DUSP14O95147 198 aaKnown RBP7.1□□□□□ -1.27
CUX1-216ENST00000558469 HLA-DRB4P13762 266 aa7.1□□□□□ -1.27
CUX1-216ENST00000558469 CNN1P51911 297 aaKnown RBP7.1□□□□□ -1.27
CUX1-216ENST00000558469 HIST1H2BAQ96A08 127 aa7.1□□□□□ -1.27
CUX1-216ENST00000558469 SGK494Q96LW2 274 aa7.1□□□□□ -1.27
CUX1-216ENST00000558469 VGLL1Q99990 258 aa7.1□□□□□ -1.27
CUX1-216ENST00000558469 TCEAL7Q9BRU2 100 aa7.1□□□□□ -1.27
CUX1-216ENST00000558469 ATG101Q9BSB4 218 aa7.1□□□□□ -1.27
CUX1-216ENST00000558469 TUBA4BQ9H853 241 aa7.1□□□□□ -1.27
CUX1-216ENST00000558469 HLA-DRB4X5D2U9 266 aa7.1□□□□□ -1.27
CUX1-216ENST00000558469 DNHD1Q96M86 4753 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms