RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 LSM4Q9Y4Z0 139 aaKnown RBP12.98□□□□□ -0.33
CUX1-213ENST00000549414 GAGE10A6NGK3 116 aa12.98□□□□□ -0.33
CUX1-213ENST00000549414 Q96MF0 132 aa12.98□□□□□ -0.33
CUX1-213ENST00000549414 SCGB3A1Q96QR1 104 aa12.98□□□□□ -0.33
CUX1-213ENST00000549414 NCKAP5O14513 1909 aa12.98□□□□□ -0.33
CUX1-213ENST00000549414 PRSS2P07478 247 aa12.98□□□□□ -0.33
CUX1-213ENST00000549414 MORN5Q5VZ52 161 aa12.98□□□□□ -0.33
CUX1-213ENST00000549414 Q8NA96 180 aa12.98□□□□□ -0.33
CUX1-213ENST00000549414 IGLC1P0CG04 106 aa12.97□□□□□ -0.33
CUX1-213ENST00000549414 UBE2E1P51965 193 aa12.97□□□□□ -0.33
CUX1-213ENST00000549414 AMN1Q8IY45 258 aa12.97□□□□□ -0.33
CUX1-213ENST00000549414 V9GYV3 84 aa12.97□□□□□ -0.33
CUX1-213ENST00000549414 TRAV9-2A0A087WT02 112 aa12.97□□□□□ -0.33
CUX1-213ENST00000549414 JMJD8Q96S16 334 aa12.97□□□□□ -0.33
CUX1-213ENST00000549414 TMEM170BQ5T4T1 132 aa12.97□□□□□ -0.33
CUX1-213ENST00000549414 TANC2Q9HCD6 1990 aa12.97□□□□□ -0.33
CUX1-213ENST00000549414 OR11H12B2RN74 326 aa12.96□□□□□ -0.33
CUX1-213ENST00000549414 MSMBP08118 114 aa12.96□□□□□ -0.33
CUX1-213ENST00000549414 LDLRAD2Q5SZI1 272 aa12.96□□□□□ -0.33
CUX1-213ENST00000549414 OR11H1Q8NG94 326 aa12.96□□□□□ -0.33
CUX1-213ENST00000549414 OR11H2Q8NH07 326 aa12.96□□□□□ -0.33
CUX1-213ENST00000549414 LOC107984156A0A0G2JMH3 177 aa12.96□□□□□ -0.33
CUX1-213ENST00000549414 PSMB11A5LHX3 300 aa12.96□□□□□ -0.33
CUX1-213ENST00000549414 OVOL3O00110 214 aa12.96□□□□□ -0.33
CUX1-213ENST00000549414 VWC2Q2TAL6 325 aa12.96□□□□□ -0.33
CUX1-213ENST00000549414 ARL17AQ8IVW1 177 aa12.96□□□□□ -0.33
CUX1-213ENST00000549414 ARHGAP32A7KAX9 2087 aa12.96□□□□□ -0.33
CUX1-213ENST00000549414 TRAV21A0A0B4J279 112 aa12.96□□□□□ -0.34
CUX1-213ENST00000549414 K7EN84 100 aa12.96□□□□□ -0.34
CUX1-213ENST00000549414 NDUFA3O95167 84 aa12.96□□□□□ -0.34
CUX1-213ENST00000549414 IGHV2-70P01814 119 aa12.96□□□□□ -0.34
CUX1-213ENST00000549414 HBDP02042 147 aa12.96□□□□□ -0.34
CUX1-213ENST00000549414 NRGNQ92686 78 aa12.96□□□□□ -0.34
CUX1-213ENST00000549414 C17orf77Q96MU5 243 aa12.96□□□□□ -0.34
CUX1-213ENST00000549414 DUX3Q96PT4 197 aa12.96□□□□□ -0.34
CUX1-213ENST00000549414 JKAMPQ9P055 326 aa12.96□□□□□ -0.34
CUX1-213ENST00000549414 KMT2EQ8IZD2 1858 aa12.96□□□□□ -0.34
CUX1-213ENST00000549414 LCNL1Q6ZST4 164 aa12.96□□□□□ -0.34
CUX1-213ENST00000549414 LINC01587Q99440 93 aa12.96□□□□□ -0.34
CUX1-213ENST00000549414 EML5Q05BV3 1969 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 PRUNE2Q8WUY3 3088 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 E7EUB6 86 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 NPIPB6E9PJ23 425 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 BRWD1-AS2P59051 145 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 FAM120AOSQ5T036 256 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 FXYD5Q96DB9 178 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 C8orf49Q96NF6 230 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 C21orf62-AS1Q17RA5 79 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 IL17RELQ6ZVW7 336 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 PRRC2AP48634 2157 aaKnown RBP12.95□□□□□ -0.34
CUX1-213ENST00000549414 TRBV19A0A075B6N1 114 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 IGHV2-70DA0A0C4DH43 119 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 FCN3O75636 299 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 SLAQ13239 276 aa12.95□□□□□ -0.34
CUX1-213ENST00000549414 TDGF1P3P51864 188 aa12.94□□□□□ -0.34
CUX1-213ENST00000549414 C11orf1Q9H5F2 150 aa12.94□□□□□ -0.34
CUX1-213ENST00000549414 hDV102S1A0JD36 115 aa12.94□□□□□ -0.34
CUX1-213ENST00000549414 TMEM213A2RRL7 107 aa12.94□□□□□ -0.34
CUX1-213ENST00000549414 ODF3L1Q8IXM7 274 aa12.94□□□□□ -0.34
CUX1-213ENST00000549414 IFI27L1Q96BM0 104 aa12.94□□□□□ -0.34
CUX1-213ENST00000549414 ATP5LO75964 103 aa12.93□□□□□ -0.34
CUX1-213ENST00000549414 GUSBP1Q15486 140 aa12.93□□□□□ -0.34
CUX1-213ENST00000549414 TNRC6AQ8NDV7 1962 aaKnown RBP12.93□□□□□ -0.34
CUX1-213ENST00000549414 IGKV1OR2-108A0A075B7D4 117 aa12.93□□□□□ -0.34
CUX1-213ENST00000549414 C1orf194Q5T5A4 169 aa12.93□□□□□ -0.34
CUX1-213ENST00000549414 CDPF1Q6NVV7 123 aa12.93□□□□□ -0.34
CUX1-213ENST00000549414 C11orf52Q96A22 123 aa12.93□□□□□ -0.34
CUX1-213ENST00000549414 TRBV7-1A0A0A6YYK4 115 aa12.93□□□□□ -0.34
CUX1-213ENST00000549414 SLC25A16P16260 332 aa12.93□□□□□ -0.34
CUX1-213ENST00000549414 LYPD1Q8N2G4 141 aa12.93□□□□□ -0.34
CUX1-213ENST00000549414 LINC01356Q8N9X3 169 aa12.93□□□□□ -0.34
CUX1-213ENST00000549414 C18orf32Q8TCD1 76 aa12.93□□□□□ -0.34
CUX1-213ENST00000549414 RHPN1-AS1Q9BWJ2 59 aa12.93□□□□□ -0.34
CUX1-213ENST00000549414 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.92□□□□□ -0.34
CUX1-213ENST00000549414 SRSF8Q9BRL6 282 aaKnown RBP12.92□□□□□ -0.34
CUX1-213ENST00000549414 SAP30O75446 220 aa12.92□□□□□ -0.34
CUX1-213ENST00000549414 CR1LQ2VPA4 569 aa12.92□□□□□ -0.34
CUX1-213ENST00000549414 ZNF295-AS1Q8N0V1 137 aa12.92□□□□□ -0.34
CUX1-213ENST00000549414 TMEM262E9PQX1 116 aa12.92□□□□□ -0.34
CUX1-213ENST00000549414 TYMSP04818 313 aa12.92□□□□□ -0.34
CUX1-213ENST00000549414 CHCHD1Q96BP2 118 aaKnown RBP12.92□□□□□ -0.34
CUX1-213ENST00000549414 PEMTQ9UBM1 199 aa12.92□□□□□ -0.34
CUX1-213ENST00000549414 TRGV2A0A075B6R0 118 aa12.92□□□□□ -0.34
CUX1-213ENST00000549414 F2Z2F3 143 aa12.92□□□□□ -0.34
CUX1-213ENST00000549414 NDUFS6O75380 124 aaKnown RBP12.92□□□□□ -0.34
CUX1-213ENST00000549414 FABP2P12104 132 aa12.92□□□□□ -0.34
CUX1-213ENST00000549414 YPEL3P61236 119 aaPredicted RBP12.92□□□□□ -0.34
CUX1-213ENST00000549414 PIP4P2Q8N4L2 257 aa12.91□□□□□ -0.34
CUX1-213ENST00000549414 MRPL36Q9P0J6 103 aaKnown RBP12.91□□□□□ -0.34
CUX1-213ENST00000549414 IGHV1-69DA0A0B4J2H0 117 aa12.91□□□□□ -0.34
CUX1-213ENST00000549414 IGHV1-69P01742 117 aa12.91□□□□□ -0.34
CUX1-213ENST00000549414 TRAV12-3A0A0B4J271 114 aa12.91□□□□□ -0.34
CUX1-213ENST00000549414 UBE2L6O14933 153 aa12.91□□□□□ -0.34
CUX1-213ENST00000549414 ADORA2A-AS1P86434 159 aa12.91□□□□□ -0.34
CUX1-213ENST00000549414 TMEM249Q2WGJ8 235 aa12.91□□□□□ -0.34
CUX1-213ENST00000549414 RASL11AQ6T310 242 aa12.91□□□□□ -0.34
CUX1-213ENST00000549414 THAP8Q8NA92 274 aa12.91□□□□□ -0.34
CUX1-213ENST00000549414 FAM110DQ8TAY7 271 aaPredicted RBP12.91□□□□□ -0.34
CUX1-213ENST00000549414 HLA-DMBP28068 263 aa12.9□□□□□ -0.34
CUX1-213ENST00000549414 PPBPP02775 128 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms