RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 VGLL1Q99990 258 aa8.59□□□□□ -1.04
CUX1-212ENST00000547394 RPP21Q9H633 154 aaKnown RBP8.59□□□□□ -1.04
CUX1-212ENST00000547394 PSG8Q9UQ74 426 aa8.59□□□□□ -1.04
CUX1-212ENST00000547394 TRAV30A0A087WSZ9 112 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 TRGV3P03979 118 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 CRIP1P50238 77 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 DEFB1P60022 68 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 HIST2H2BDQ6DRA6 164 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 DUX5Q96PT3 197 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 MOB4Q9Y3A3 225 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 DIRC3C9JPN6 131 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 SCGB1D1O95968 90 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 TGFAP01135 160 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 APCSP02743 223 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 COX6B1P14854 86 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 TSKUQ8WUA8 353 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 GNB1LQ9BYB4 327 aa8.58□□□□□ -1.04
CUX1-212ENST00000547394 ZNF253O75346 499 aa8.57□□□□□ -1.04
CUX1-212ENST00000547394 ZNF705DP0CH99 300 aaPredicted RBP8.57□□□□□ -1.04
CUX1-212ENST00000547394 ZNF705BP0CI00 300 aaPredicted RBP8.57□□□□□ -1.04
CUX1-212ENST00000547394 TPPP2P59282 170 aa8.57□□□□□ -1.04
CUX1-212ENST00000547394 TMEM75Q8N9X5 138 aa8.57□□□□□ -1.04
CUX1-212ENST00000547394 TMEM18Q96B42 140 aa8.57□□□□□ -1.04
CUX1-212ENST00000547394 NDUFAF3Q9BU61 184 aa8.57□□□□□ -1.04
CUX1-212ENST00000547394 CLPSL1A2RUU4 121 aa8.57□□□□□ -1.04
CUX1-212ENST00000547394 EREGO14944 169 aa8.57□□□□□ -1.04
CUX1-212ENST00000547394 IGHV4-59P01825 116 aa8.57□□□□□ -1.04
CUX1-212ENST00000547394 UNQ9165/PRO28630Q6UXU0 137 aa8.57□□□□□ -1.04
CUX1-212ENST00000547394 C2orf88Q9BSF0 95 aa8.57□□□□□ -1.04
CUX1-212ENST00000547394 SAMD10Q9BYL1 202 aa8.57□□□□□ -1.04
CUX1-212ENST00000547394 AAMDCQ9H7C9 122 aa8.57□□□□□ -1.04
CUX1-212ENST00000547394 ZFAND3Q9H8U3 227 aa8.57□□□□□ -1.04
CUX1-212ENST00000547394 C19orf71A6NCJ1 209 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 IGHG4P01861 327 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 PF4V1P10720 104 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 NTF3P20783 257 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 PSG3Q16557 428 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 FAM231DQ6ZW35 169 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 Q6ZWC4 215 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 TRBV9A0A0B4J1U6 114 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 PRSS47A8MTI9 375 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 CHEK1O14757 476 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 EDN2P20800 178 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 PMCHL1Q16048 86 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 TDRG1Q3Y452 100 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 WNK1Q9H4A3 2382 aa8.56□□□□□ -1.04
CUX1-212ENST00000547394 ATP5G2Q06055 141 aa8.55□□□□□ -1.04
CUX1-212ENST00000547394 Q6ZQT7 251 aa8.55□□□□□ -1.04
CUX1-212ENST00000547394 POLR3KQ9Y2Y1 108 aaPredicted RBP8.55□□□□□ -1.04
CUX1-212ENST00000547394 J3KRW8 73 aa8.55□□□□□ -1.04
CUX1-212ENST00000547394 RPL7P18124 248 aaKnown RBP8.55□□□□□ -1.04
CUX1-212ENST00000547394 ZNF138P52744 262 aa8.55□□□□□ -1.04
CUX1-212ENST00000547394 DEFB112Q30KQ8 113 aa8.55□□□□□ -1.04
CUX1-212ENST00000547394 PRSS22Q9GZN4 317 aa8.55□□□□□ -1.04
CUX1-212ENST00000547394 TRAV9-1A0A075B6T8 112 aa8.55□□□□□ -1.04
CUX1-212ENST00000547394 B4DSR2 109 aa8.55□□□□□ -1.04
CUX1-212ENST00000547394 NDUFS8O00217 210 aa8.55□□□□□ -1.04
CUX1-212ENST00000547394 ARMS2P0C7Q2 107 aa8.55□□□□□ -1.04
CUX1-212ENST00000547394 ZNF80P51504 273 aaPredicted RBP8.55□□□□□ -1.04
CUX1-212ENST00000547394 RELQ04864 619 aaPredicted RBP8.55□□□□□ -1.04
CUX1-212ENST00000547394 VN1R17PQ8TDU5 208 aa8.55□□□□□ -1.04
CUX1-212ENST00000547394 EEF1AKMT3Q96AZ1 226 aa8.55□□□□□ -1.04
CUX1-212ENST00000547394 TIMM8BQ9Y5J9 83 aaPredicted RBP8.55□□□□□ -1.04
CUX1-212ENST00000547394 GCN1Q92616 2671 aaKnown RBP8.54□□□□□ -1.04
CUX1-212ENST00000547394 TCAPO15273 167 aa8.54□□□□□ -1.04
CUX1-212ENST00000547394 BUB3O43684 328 aa8.54□□□□□ -1.04
CUX1-212ENST00000547394 SRD5A1P18405 259 aa8.54□□□□□ -1.04
CUX1-212ENST00000547394 WDR73Q6P4I2 378 aa8.54□□□□□ -1.04
CUX1-212ENST00000547394 FASNP49327 2511 aaKnown RBP8.54□□□□□ -1.04
CUX1-212ENST00000547394 A8MWL6 223 aa8.54□□□□□ -1.04
CUX1-212ENST00000547394 HLA-DQA1P01909 254 aa8.54□□□□□ -1.04
CUX1-212ENST00000547394 PPIFP30405 207 aaKnown RBP8.54□□□□□ -1.04
CUX1-212ENST00000547394 AMTP48728 403 aa8.54□□□□□ -1.04
CUX1-212ENST00000547394 KRTDAPP60985 99 aa8.54□□□□□ -1.04
CUX1-212ENST00000547394 ZNF124Q15973 351 aa8.54□□□□□ -1.04
CUX1-212ENST00000547394 ZNF48Q96MX3 618 aaPredicted RBP8.54□□□□□ -1.04
CUX1-212ENST00000547394 GOSR1O95249 250 aa8.53□□□□□ -1.04
CUX1-212ENST00000547394 BTF3P20290 206 aaKnown RBP8.53□□□□□ -1.04
CUX1-212ENST00000547394 CSN1S1P47710 185 aa8.53□□□□□ -1.04
CUX1-212ENST00000547394 LBHQ53QV2 105 aaPredicted RBP8.53□□□□□ -1.04
CUX1-212ENST00000547394 LCN12Q6JVE5 192 aa8.53□□□□□ -1.04
CUX1-212ENST00000547394 IL17RELQ6ZVW7 336 aa8.53□□□□□ -1.04
CUX1-212ENST00000547394 A0A1W2PS18 150 aa8.53□□□□□ -1.04
CUX1-212ENST00000547394 K7EQM0 130 aa8.53□□□□□ -1.04
CUX1-212ENST00000547394 SMAD7O15105 426 aaKnown RBP8.53□□□□□ -1.04
CUX1-212ENST00000547394 G0S2P27469 103 aa8.53□□□□□ -1.04
CUX1-212ENST00000547394 ARL3P36405 182 aa8.53□□□□□ -1.04
CUX1-212ENST00000547394 C18orf32Q8TCD1 76 aa8.53□□□□□ -1.04
CUX1-212ENST00000547394 A6NDX4 124 aa8.52□□□□□ -1.04
CUX1-212ENST00000547394 CSN3P07498 182 aa8.52□□□□□ -1.04
CUX1-212ENST00000547394 RPL11P62913 178 aaKnown RBP8.52□□□□□ -1.04
CUX1-212ENST00000547394 HBBP68871 147 aa8.52□□□□□ -1.04
CUX1-212ENST00000547394 RNASEKQ6P5S7 137 aaKnown RBP8.52□□□□□ -1.04
CUX1-212ENST00000547394 SNHG12Q9BXW3 62 aa8.52□□□□□ -1.04
CUX1-212ENST00000547394 MEGF9Q9H1U4 602 aa8.52□□□□□ -1.04
CUX1-212ENST00000547394 SH2D1AO60880 128 aa8.52□□□□□ -1.05
CUX1-212ENST00000547394 MT-ND6P03923 174 aa8.52□□□□□ -1.05
CUX1-212ENST00000547394 NUTF2P61970 127 aaKnown RBP8.52□□□□□ -1.05
CUX1-212ENST00000547394 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.52□□□□□ -1.05
CUX1-212ENST00000547394 UNC79Q9P2D8 2635 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms