RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PIFOQ8TCI5 191 aa10.76□□□□□ -0.69
VPS33A-208ENST00000543633 C8orf49Q96NF6 230 aa10.76□□□□□ -0.69
VPS33A-208ENST00000543633 C7orf71A4D174 169 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 LINC01546A6NGU7 62 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 M0R3E3 92 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 HSD52Q0P140 79 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 C21orf62-AS1Q17RA5 79 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 MRPL51Q4U2R6 128 aaKnown RBP10.75□□□□□ -0.69
VPS33A-208ENST00000543633 AMMECR1LQ6DCA0 310 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 OR4X2Q8NGF9 303 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 CBY3A6NI87 242 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 H3BRM9 83 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 M0R1W7 72 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 IGLC6P0CF74 106 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 DLX1P56177 255 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 C5orf64Q2M2E5 130 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 PRR25Q96S07 402 aa10.75□□□□□ -0.69
VPS33A-208ENST00000543633 MCRIP2Q9BUT9 160 aaKnown RBP10.75□□□□□ -0.69
VPS33A-208ENST00000543633 ZGRF1Q86YA3 2104 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 SMAD7O15105 426 aaKnown RBP10.74□□□□□ -0.69
VPS33A-208ENST00000543633 OCIAD2Q56VL3 154 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 AMN1Q8IY45 258 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 PIP4P2Q8N4L2 257 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 TTC9CQ8N5M4 171 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 OR8A1Q8NGG7 326 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 FANCD2OSQ96PS1 177 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 TPPP3Q9BW30 176 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 CNFNQ9BYD5 112 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 THYN1Q9P016 225 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 TLN1Q9Y490 2541 aaKnown RBP10.74□□□□□ -0.69
VPS33A-208ENST00000543633 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.74□□□□□ -0.69
VPS33A-208ENST00000543633 TMEM213A2RRL7 107 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 ODF3BA8MYP8 253 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 COTL1Q14019 142 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 FER1L6-AS1Q8NA97 138 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 IFI27L1Q96BM0 104 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 ONECUT1Q9UBC0 465 aa10.74□□□□□ -0.69
VPS33A-208ENST00000543633 TRAV8-6A0A0B4J262 113 aa10.73□□□□□ -0.69
VPS33A-208ENST00000543633 OOSP1A8MZH6 123 aa10.73□□□□□ -0.69
VPS33A-208ENST00000543633 F8W735 103 aaPredicted RBP10.73□□□□□ -0.69
VPS33A-208ENST00000543633 LDLRAD2Q5SZI1 272 aa10.73□□□□□ -0.69
VPS33A-208ENST00000543633 ZNF562Q6V9R5 426 aa10.73□□□□□ -0.69
VPS33A-208ENST00000543633 GTF2H5Q6ZYL4 71 aa10.73□□□□□ -0.69
VPS33A-208ENST00000543633 C21orf62Q9NYP8 219 aa10.73□□□□□ -0.69
VPS33A-208ENST00000543633 TIMM8BQ9Y5J9 83 aaPredicted RBP10.73□□□□□ -0.69
VPS33A-208ENST00000543633 MAP1BP46821 2468 aaKnown RBP10.73□□□□□ -0.69
VPS33A-208ENST00000543633 C9orf118A6NHY6 69 aa10.72□□□□□ -0.69
VPS33A-208ENST00000543633 K7ERU9 68 aa10.72□□□□□ -0.69
VPS33A-208ENST00000543633 LOXL1Q08397 574 aaPredicted RBP10.72□□□□□ -0.69
VPS33A-208ENST00000543633 ARPC1AQ92747 370 aa10.72□□□□□ -0.69
VPS33A-208ENST00000543633 VKORC1Q9BQB6 163 aa10.72□□□□□ -0.69
VPS33A-208ENST00000543633 A1L4Q6 167 aa10.72□□□□□ -0.69
VPS33A-208ENST00000543633 FAM106CPP0CH98 169 aa10.72□□□□□ -0.69
VPS33A-208ENST00000543633 CACNG7P62955 275 aa10.72□□□□□ -0.69
VPS33A-208ENST00000543633 ZNF672Q499Z4 452 aaPredicted RBP10.72□□□□□ -0.69
VPS33A-208ENST00000543633 FAM106AQ4KMX7 169 aa10.72□□□□□ -0.69
VPS33A-208ENST00000543633 PRR30Q53SZ7 412 aaPredicted RBP10.72□□□□□ -0.69
VPS33A-208ENST00000543633 CCDC144NLQ6NUI1 221 aa10.72□□□□□ -0.69
VPS33A-208ENST00000543633 RABAC1Q9UI14 185 aa10.72□□□□□ -0.69
VPS33A-208ENST00000543633 SH3BGRL2Q9UJC5 107 aa10.72□□□□□ -0.69
VPS33A-208ENST00000543633 CKS2P33552 79 aa10.71□□□□□ -0.69
VPS33A-208ENST00000543633 RAB9AP51151 201 aa10.71□□□□□ -0.69
VPS33A-208ENST00000543633 FBXL19-AS1Q494R0 122 aa10.71□□□□□ -0.69
VPS33A-208ENST00000543633 UFSP1Q6NVU6 142 aa10.71□□□□□ -0.69
VPS33A-208ENST00000543633 SMIM15Q7Z3B0 74 aa10.71□□□□□ -0.69
VPS33A-208ENST00000543633 AP1S3Q96PC3 154 aa10.71□□□□□ -0.69
VPS33A-208ENST00000543633 MAP1LC3AQ9H492 121 aa10.71□□□□□ -0.69
VPS33A-208ENST00000543633 IGKV2-40A0A087WW87 121 aaPredicted RBP10.7□□□□□ -0.7
VPS33A-208ENST00000543633 LOC389332A0A1B0GUA5 103 aa10.7□□□□□ -0.7
VPS33A-208ENST00000543633 NPYP01303 97 aa10.7□□□□□ -0.7
VPS33A-208ENST00000543633 IGKV2D-40P01614 121 aaPredicted RBP10.7□□□□□ -0.7
VPS33A-208ENST00000543633 EGR2P11161 476 aaPredicted RBP10.7□□□□□ -0.7
VPS33A-208ENST00000543633 PRTN3P24158 256 aa10.7□□□□□ -0.7
VPS33A-208ENST00000543633 PRB3Q04118 309 aaPredicted RBP10.7□□□□□ -0.7
VPS33A-208ENST00000543633 ITPR1Q14643 2758 aa10.7□□□□□ -0.7
VPS33A-208ENST00000543633 ASCL2Q99929 193 aa10.7□□□□□ -0.7
VPS33A-208ENST00000543633 NXT2Q9NPJ8 142 aaKnown RBP10.7□□□□□ -0.7
VPS33A-208ENST00000543633 GAGE12BA1L429 117 aa10.7□□□□□ -0.7
VPS33A-208ENST00000543633 RBAKDNA6NC62 111 aa10.7□□□□□ -0.7
VPS33A-208ENST00000543633 LYNX1G3V0Z9 82 aa10.7□□□□□ -0.7
VPS33A-208ENST00000543633 LYNX1P0DP58 116 aa10.7□□□□□ -0.7
VPS33A-208ENST00000543633 ADAMTSL5Q6ZMM2 481 aa10.7□□□□□ -0.7
VPS33A-208ENST00000543633 ERASQ7Z444 233 aa10.7□□□□□ -0.7
VPS33A-208ENST00000543633 Q8N6K4 173 aa10.7□□□□□ -0.7
VPS33A-208ENST00000543633 TIMD4Q96H15 378 aa10.7□□□□□ -0.7
VPS33A-208ENST00000543633 TMSB15BA0A087X1C1 80 aa10.69□□□□□ -0.7
VPS33A-208ENST00000543633 GAGE10A6NGK3 116 aa10.69□□□□□ -0.7
VPS33A-208ENST00000543633 EBI3Q14213 229 aa10.69□□□□□ -0.7
VPS33A-208ENST00000543633 KLK9Q2XQG4 91 aa10.69□□□□□ -0.7
VPS33A-208ENST00000543633 C1orf122Q6ZSJ8 110 aa10.69□□□□□ -0.7
VPS33A-208ENST00000543633 PRORYQ9H606 182 aa10.69□□□□□ -0.7
VPS33A-208ENST00000543633 HIGD1BQ9P298 99 aa10.69□□□□□ -0.7
VPS33A-208ENST00000543633 KLK9Q9UKQ9 250 aa10.69□□□□□ -0.7
VPS33A-208ENST00000543633 NDUFS7O75251 213 aa10.68□□□□□ -0.7
VPS33A-208ENST00000543633 HLA-DRB4P13762 266 aa10.68□□□□□ -0.7
VPS33A-208ENST00000543633 TWIST1Q15672 202 aa10.68□□□□□ -0.7
VPS33A-208ENST00000543633 RNF151Q2KHN1 245 aa10.68□□□□□ -0.7
VPS33A-208ENST00000543633 PSMG3-AS1Q96PY0 264 aa10.68□□□□□ -0.7
VPS33A-208ENST00000543633 ZMAT4Q9H898 229 aa10.68□□□□□ -0.7
VPS33A-208ENST00000543633 HLA-DRB4X5D2U9 266 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms