RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 H3BMM0 161 aa6.33□□□□□ -1.4
USP28-205ENST00000537706 KRASP01116 189 aa6.33□□□□□ -1.4
USP28-205ENST00000537706 DEFB130BP0DP73 79 aa6.33□□□□□ -1.4
USP28-205ENST00000537706 DEFB130AP0DP74 79 aa6.33□□□□□ -1.4
USP28-205ENST00000537706 AARDQ4LEZ3 155 aa6.33□□□□□ -1.4
USP28-205ENST00000537706 DPPA3Q6W0C5 159 aa6.33□□□□□ -1.4
USP28-205ENST00000537706 H2BFWTQ7Z2G1 175 aa6.33□□□□□ -1.4
USP28-205ENST00000537706 SVBPQ8N300 66 aa6.33□□□□□ -1.4
USP28-205ENST00000537706 OR2G3Q8NGZ4 309 aa6.33□□□□□ -1.4
USP28-205ENST00000537706 NTN5Q8WTR8 489 aaPredicted RBP6.33□□□□□ -1.4
USP28-205ENST00000537706 CIB3Q96Q77 187 aaPredicted RBP6.33□□□□□ -1.4
USP28-205ENST00000537706 SEC11CQ9BY50 192 aa6.33□□□□□ -1.4
USP28-205ENST00000537706 PARD6GQ9BYG4 376 aaPredicted RBP6.33□□□□□ -1.4
USP28-205ENST00000537706 RBKSQ9H477 322 aa6.33□□□□□ -1.4
USP28-205ENST00000537706 TREM1Q9NP99 234 aa6.33□□□□□ -1.4
USP28-205ENST00000537706 CGB1A6NKQ9 187 aa6.32□□□□□ -1.4
USP28-205ENST00000537706 HPRT1P00492 218 aa6.32□□□□□ -1.4
USP28-205ENST00000537706 SNCAP37840 140 aa6.32□□□□□ -1.4
USP28-205ENST00000537706 SRSF3P84103 164 aaKnown RBP6.32□□□□□ -1.4
USP28-205ENST00000537706 AKR1C1Q04828 323 aa6.32□□□□□ -1.4
USP28-205ENST00000537706 TOMM20LQ6UXN7 152 aa6.32□□□□□ -1.4
USP28-205ENST00000537706 TMEM14EPQ6UXP3 125 aa6.32□□□□□ -1.4
USP28-205ENST00000537706 FAM213BQ8TBF2 198 aa6.32□□□□□ -1.4
USP28-205ENST00000537706 METTL26Q96S19 204 aa6.32□□□□□ -1.4
USP28-205ENST00000537706 PSMG3Q9BT73 122 aaPredicted RBP6.32□□□□□ -1.4
USP28-205ENST00000537706 TMEM208Q9BTX3 173 aa6.32□□□□□ -1.4
USP28-205ENST00000537706 TMA7Q9Y2S6 64 aaKnown RBP6.32□□□□□ -1.4
USP28-205ENST00000537706 K7EIM0 57 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 SCGB2A1O75556 95 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 APOHP02749 345 aaPredicted RBP6.31□□□□□ -1.4
USP28-205ENST00000537706 METTL15P1P0C7V9 234 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 DNAH10OSP0CZ25 163 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 FHITP49789 147 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 ZNF600Q6ZNG1 722 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 NKX6-2Q9C056 277 aaPredicted RBP6.31□□□□□ -1.4
USP28-205ENST00000537706 TRAV3A0A0B4J244 114 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 CBY3A6NI87 242 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 F8W036 122 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 RS1O15537 224 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 SFTA3P0C7M3 94 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 HLA-DRB4P13762 266 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 FXYD7P58549 80 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 ERVK-16P61578 105 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 SLC38A11Q08AI6 406 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 SPANXN5Q5MJ07 72 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 AKR1C8PQ5T2L2 129 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 ATRAIDQ6UW56 229 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 OR1L8Q8NGR8 309 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 DTD1Q8TEA8 209 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 DCANP1Q8TF63 244 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 UHRF2Q96PU4 802 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 PBDC1Q9BVG4 233 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 SEPSECSQ9HD40 501 aaKnown RBP6.31□□□□□ -1.4
USP28-205ENST00000537706 HLA-DRB4X5D2U9 266 aa6.31□□□□□ -1.4
USP28-205ENST00000537706 NPIPB6E9PJ23 425 aa6.3□□□□□ -1.4
USP28-205ENST00000537706 UPK2O00526 184 aa6.3□□□□□ -1.4
USP28-205ENST00000537706 AGPAT2O15120 278 aa6.3□□□□□ -1.4
USP28-205ENST00000537706 NQO2P16083 231 aa6.3□□□□□ -1.4
USP28-205ENST00000537706 ARL16Q0P5N6 197 aa6.3□□□□□ -1.4
USP28-205ENST00000537706 BTN1A1Q13410 526 aa6.3□□□□□ -1.4
USP28-205ENST00000537706 PEA15Q15121 130 aa6.3□□□□□ -1.4
USP28-205ENST00000537706 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.3□□□□□ -1.4
USP28-205ENST00000537706 ZNF114Q8NC26 417 aa6.3□□□□□ -1.4
USP28-205ENST00000537706 OR10W1Q8NGF6 305 aa6.3□□□□□ -1.4
USP28-205ENST00000537706 OR52E5Q8NH55 327 aa6.3□□□□□ -1.4
USP28-205ENST00000537706 SCGB1C1Q8TD33 95 aa6.3□□□□□ -1.4
USP28-205ENST00000537706 PINX1Q96BK5 328 aaKnown RBP6.3□□□□□ -1.4
USP28-205ENST00000537706 HINT2Q9BX68 163 aa6.3□□□□□ -1.4
USP28-205ENST00000537706 SMDT1Q9H4I9 107 aa6.3□□□□□ -1.4
USP28-205ENST00000537706 TRAV9-2A0A087WT02 112 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 UBE2L5PA0A1B0GUS4 154 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 SNAPINO95295 136 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 NPBWR1P48145 328 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 POU2AF1Q16633 256 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 GUK1Q16774 197 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 ATP6V1FQ16864 119 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 MISP3Q96FF7 219 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 TMEM147Q9BVK8 224 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 WDR61Q9GZS3 305 aaKnown RBP6.29□□□□□ -1.4
USP28-205ENST00000537706 TIMM9Q9Y5J7 89 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 TRAV1-1A0A0B4J248 108 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 PMS2P5A8MQ11 134 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 CEBPZOSA8MTT3 80 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 SIVA1O15304 175 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 IGKV3-20P01619 116 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 H2AFB1P0C5Y9 115 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 SPCS3P61009 180 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 SERF2P84101 59 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 VWC2Q2TAL6 325 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 OR10J6PQ8NGY7 276 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 OR4A16Q8NH70 328 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 RXFP4Q8TDU9 374 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 TMEM140Q9NV12 185 aa6.29□□□□□ -1.4
USP28-205ENST00000537706 C9JQL5 133 aa6.28□□□□□ -1.4
USP28-205ENST00000537706 RAB2AP61019 212 aa6.28□□□□□ -1.4
USP28-205ENST00000537706 RPP30P78346 268 aaKnown RBP6.28□□□□□ -1.4
USP28-205ENST00000537706 WT1-ASQ06250 92 aa6.28□□□□□ -1.4
USP28-205ENST00000537706 OR5I1Q13606 314 aa6.28□□□□□ -1.4
USP28-205ENST00000537706 ESRGQ1W209 222 aa6.28□□□□□ -1.4
USP28-205ENST00000537706 OR8G2PQ6IF36 304 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms