RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 MBD2Q9UBB5 411 aa7.55□□□□□ -1.2
CD44-227ENST00000528086 ALG5Q9Y673 324 aa7.55□□□□□ -1.2
CD44-227ENST00000528086 HECTD4Q9Y4D8 3996 aa7.55□□□□□ -1.2
CD44-227ENST00000528086 TRBV19A0A075B6N1 114 aa7.54□□□□□ -1.2
CD44-227ENST00000528086 EIF3GO75821 320 aaKnown RBP eCLIP7.54□□□□□ -1.2
CD44-227ENST00000528086 AMBPP02760 352 aa7.54□□□□□ -1.2
CD44-227ENST00000528086 S100A7P31151 101 aa7.54□□□□□ -1.2
CD44-227ENST00000528086 RAB31Q13636 194 aa7.54□□□□□ -1.2
CD44-227ENST00000528086 Q6ZRG5 221 aa7.54□□□□□ -1.2
CD44-227ENST00000528086 OR1L4Q8NGR5 311 aa7.54□□□□□ -1.2
CD44-227ENST00000528086 SLC50A1Q9BRV3 221 aa7.54□□□□□ -1.2
CD44-227ENST00000528086 GOLT1BQ9Y3E0 138 aa7.54□□□□□ -1.2
CD44-227ENST00000528086 HSPB11Q9Y547 144 aa7.54□□□□□ -1.2
CD44-227ENST00000528086 PKD1P98161 4303 aa7.54□□□□□ -1.2
CD44-227ENST00000528086 DYNC1H1Q14204 4646 aaKnown RBP7.53□□□□□ -1.2
CD44-227ENST00000528086 NPIPB6E9PJ23 425 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 MPDU1O75352 247 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 INSP01308 110 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 HBE1P02100 147 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 SPART-AS1P0CW21 52 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 DEFA1P59665 94 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 DEFA3P59666 94 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 CYCSP99999 105 aaKnown RBP7.53□□□□□ -1.2
CD44-227ENST00000528086 ERCC8Q13216 396 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 RRN3P1Q2M238 152 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 GFI1BQ5VTD9 330 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 Q6ZQT7 251 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 EXOC3-AS1Q8N2X6 119 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 FXYD5Q96DB9 178 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 FAM19A4Q96LR4 140 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 PFDN5Q99471 154 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 SMIM3Q9BZL3 60 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 SLC25A31Q9H0C2 315 aa7.53□□□□□ -1.2
CD44-227ENST00000528086 DNAH11Q96DT5 4516 aa7.52□□□□□ -1.21
CD44-227ENST00000528086 TMEM189A5PLL7 270 aa7.52□□□□□ -1.21
CD44-227ENST00000528086 SSNA1O43805 119 aa7.52□□□□□ -1.21
CD44-227ENST00000528086 ZNF253O75346 499 aa7.52□□□□□ -1.21
CD44-227ENST00000528086 HIST1H1EP10412 219 aaKnown RBP7.52□□□□□ -1.21
CD44-227ENST00000528086 TSPOP30536 169 aa7.52□□□□□ -1.21
CD44-227ENST00000528086 TCTAP57738 103 aa7.52□□□□□ -1.21
CD44-227ENST00000528086 RHOBP62745 196 aa7.52□□□□□ -1.21
CD44-227ENST00000528086 OXA1LQ15070 435 aa7.52□□□□□ -1.21
CD44-227ENST00000528086 LRRC20Q8TCA0 184 aa7.52□□□□□ -1.21
CD44-227ENST00000528086 RNASE8Q8TDE3 154 aaKnown RBP7.52□□□□□ -1.21
CD44-227ENST00000528086 NIPSNAP3BQ9BS92 247 aa7.52□□□□□ -1.21
CD44-227ENST00000528086 AGPAT4-IT1Q9H0P7 198 aa7.52□□□□□ -1.21
CD44-227ENST00000528086 G3V3Q6 166 aa7.51□□□□□ -1.21
CD44-227ENST00000528086 RLN2P04090 185 aa7.51□□□□□ -1.21
CD44-227ENST00000528086 RPL12P30050 165 aaKnown RBP7.51□□□□□ -1.21
CD44-227ENST00000528086 CDKN1BP46527 198 aa7.51□□□□□ -1.21
CD44-227ENST00000528086 GUK1Q16774 197 aa7.51□□□□□ -1.21
CD44-227ENST00000528086 PRR9Q5T870 116 aa7.51□□□□□ -1.21
CD44-227ENST00000528086 S100A7AQ86SG5 101 aa7.51□□□□□ -1.21
CD44-227ENST00000528086 PHYHIPLQ96FC7 376 aa7.51□□□□□ -1.21
CD44-227ENST00000528086 ATP5SQ99766 215 aa7.51□□□□□ -1.21
CD44-227ENST00000528086 PKHD1P08F94 4074 aa7.51□□□□□ -1.21
CD44-227ENST00000528086 ZNF324O75467 553 aaPredicted RBP7.5□□□□□ -1.21
CD44-227ENST00000528086 PTTG1O95997 202 aa7.5□□□□□ -1.21
CD44-227ENST00000528086 TAS2R60P59551 318 aa7.5□□□□□ -1.21
CD44-227ENST00000528086 CD300CQ08708 224 aa7.5□□□□□ -1.21
CD44-227ENST00000528086 ZFAND2AQ8N6M9 145 aa7.5□□□□□ -1.21
CD44-227ENST00000528086 LINC00612Q8N6U2 182 aa7.5□□□□□ -1.21
CD44-227ENST00000528086 BLNKQ8WV28 456 aa7.5□□□□□ -1.21
CD44-227ENST00000528086 MRPL53Q96EL3 112 aaKnown RBP7.5□□□□□ -1.21
CD44-227ENST00000528086 ODF3Q96PU9 254 aa7.5□□□□□ -1.21
CD44-227ENST00000528086 LINC01587Q99440 93 aa7.5□□□□□ -1.21
CD44-227ENST00000528086 VGLL1Q99990 258 aa7.5□□□□□ -1.21
CD44-227ENST00000528086 RNF24Q9Y225 148 aa7.5□□□□□ -1.21
CD44-227ENST00000528086 IGKV2-40A0A087WW87 121 aaPredicted RBP7.49□□□□□ -1.21
CD44-227ENST00000528086 KLLNB2CW77 178 aa7.49□□□□□ -1.21
CD44-227ENST00000528086 IGKV2D-40P01614 121 aaPredicted RBP7.49□□□□□ -1.21
CD44-227ENST00000528086 OR10J4P0C629 311 aa7.49□□□□□ -1.21
CD44-227ENST00000528086 NBEAP1P0C6P0 100 aa7.49□□□□□ -1.21
CD44-227ENST00000528086 PDE6HQ13956 83 aa7.49□□□□□ -1.21
CD44-227ENST00000528086 ICAM4Q14773 271 aa7.49□□□□□ -1.21
CD44-227ENST00000528086 TMEM88Q6PEY1 159 aa7.49□□□□□ -1.21
CD44-227ENST00000528086 TMEM208Q9BTX3 173 aa7.49□□□□□ -1.21
CD44-227ENST00000528086 OR51M1Q9H341 326 aa7.49□□□□□ -1.21
CD44-227ENST00000528086 FUT9Q9Y231 359 aa7.49□□□□□ -1.21
CD44-227ENST00000528086 TRAV12-3A0A0B4J271 114 aa7.48□□□□□ -1.21
CD44-227ENST00000528086 LYRM9A8MSI8 78 aa7.48□□□□□ -1.21
CD44-227ENST00000528086 J3KRW8 73 aa7.48□□□□□ -1.21
CD44-227ENST00000528086 HTN3P15516 51 aa7.48□□□□□ -1.21
CD44-227ENST00000528086 FFAR4Q5NUL3 377 aa7.48□□□□□ -1.21
CD44-227ENST00000528086 C9orf47Q6ZRZ4 202 aa7.48□□□□□ -1.21
CD44-227ENST00000528086 TMEM256Q8N2U0 113 aa7.48□□□□□ -1.21
CD44-227ENST00000528086 C11orf72Q8NBR9 251 aa7.48□□□□□ -1.21
CD44-227ENST00000528086 OR10J6PQ8NGY7 276 aa7.48□□□□□ -1.21
CD44-227ENST00000528086 RNF141Q8WVD5 230 aa7.48□□□□□ -1.21
CD44-227ENST00000528086 PAXXQ9BUH6 204 aa7.48□□□□□ -1.21
CD44-227ENST00000528086 MUC4Q99102 2169 aa7.47□□□□□ -1.21
CD44-227ENST00000528086 H7BYZ3 331 aa7.47□□□□□ -1.21
CD44-227ENST00000528086 DEFB130BP0DP73 79 aa7.47□□□□□ -1.21
CD44-227ENST00000528086 DEFB130AP0DP74 79 aa7.47□□□□□ -1.21
CD44-227ENST00000528086 HTN1P15515 57 aa7.47□□□□□ -1.21
CD44-227ENST00000528086 CRISP2P16562 243 aa7.47□□□□□ -1.21
CD44-227ENST00000528086 RAB2AP61019 212 aa7.47□□□□□ -1.21
CD44-227ENST00000528086 DAD1P61803 113 aa7.47□□□□□ -1.21
CD44-227ENST00000528086 BTN1A1Q13410 526 aa7.47□□□□□ -1.21
CD44-227ENST00000528086 FAM122CQ6P4D5 195 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms