RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 STAG3L4Q8TBR4 150 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 RPS4Y2Q8TD47 263 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 BORCS8Q96FH0 119 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 AP1S3Q96PC3 154 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 TMEM147Q9BVK8 224 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 AGPAT4-IT1Q9H0P7 198 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 POMKQ9H5K3 350 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 MANBALQ9NQG1 85 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 COMMD9Q9P000 198 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 RPUSD1Q9UJJ7 312 aaKnown RBP2.4□□□□□ -2.03
CD44-217ENST00000525348 NOP16Q9Y3C1 178 aaKnown RBP2.4□□□□□ -2.03
CD44-217ENST00000525348 AMMECR1Q9Y4X0 333 aaPredicted RBP2.4□□□□□ -2.03
CD44-217ENST00000525348 PHF3Q92576 2039 aaKnown RBP2.4□□□□□ -2.03
CD44-217ENST00000525348 ANKRD36A6QL64 1941 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 PTPRDP23468 1912 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 ANKRD12Q6UB98 2062 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 DOCK8Q8NF50 2099 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 LTBP2Q14767 1821 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 TRAV27A0A087WT01 109 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 C3orf85A0A1B0GTC6 90 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 TEX50A0A1B0GTY4 177 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 DPRXA6NFQ7 191 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 C17orf112F2Z3M2 114 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 K7EM74 188 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 SDCBPO00560 298 aaPredicted RBP2.39□□□□□ -2.03
CD44-217ENST00000525348 SOD1P00441 154 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 IGHV3-7P01780 117 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 C3orf79P0CE67 100 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 ZNF286BP0CG31 522 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 CRYGSP22914 178 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 PRSS3P35030 304 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 RPL22P35268 128 aaKnown RBP2.39□□□□□ -2.03
CD44-217ENST00000525348 PPP1CCP36873 323 aaKnown RBP2.39□□□□□ -2.03
CD44-217ENST00000525348 ASIPP42127 132 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 CAV3P56539 151 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 LINC00315P59091 139 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 PRDX1Q06830 199 aaKnown RBP2.39□□□□□ -2.03
CD44-217ENST00000525348 FUT5Q11128 374 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 ARFRP1Q13795 201 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 VMA21Q3ZAQ7 101 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 PVRIGQ6DKI7 326 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 Q6ZQT7 251 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 AAED1Q7RTV5 226 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 PRR15Q8IV56 129 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 SCGB1C1Q8TD33 95 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 PPDPFLQ8WWR9 84 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 SMIM14Q96QK8 99 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 GPX7Q96SL4 187 aaPredicted RBP2.39□□□□□ -2.03
CD44-217ENST00000525348 PMCHL2Q9BQD1 86 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 SHANK2-AS3Q9BTD1 123 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 TMEM70Q9BUB7 260 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 GABARAPL3Q9BY60 117 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 HHLA3Q9XRX5 114 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 PXMP4Q9Y6I8 212 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 KIAA0100Q14667 2235 aaKnown RBP2.39□□□□□ -2.03
CD44-217ENST00000525348 LRRC37AA6NMS7 1700 aa2.39□□□□□ -2.03
CD44-217ENST00000525348 MAST2Q6P0Q8 1798 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 ATG2BQ96BY7 2078 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 hCG_1818297A0A087WSY0 165 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 TRAV1-1A0A0B4J248 108 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 A0A1B0GV50 99 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 A0A1B0GWB2 263 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 A0A1B0GXF2 115 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 SSC5DA1L4H1 1573 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 A8MT66 165 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 A8MWL6 223 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 CCL21O00585 134 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 IGHV3-48P01763 117 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 GYPAP02724 150 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 ZNF688P0C7X2 276 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 CRISP2P16562 243 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 PSMB3P49720 205 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 TAS2R45P59539 299 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 KRTAP10-10P60014 251 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 KRTDAPP60985 99 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 RPS11P62280 158 aaKnown RBP eCLIP2.38□□□□□ -2.03
CD44-217ENST00000525348 LYRM7Q5U5X0 104 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 C22orf39Q6P5X5 142 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 SLC25A34Q6PIV7 304 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 ZNF322Q6U7Q0 402 aaPredicted RBP2.38□□□□□ -2.03
CD44-217ENST00000525348 ZNF493Q6ZR52 646 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 SBSPONQ8IVN8 264 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 ANKRD29Q8N6D5 301 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 OR10G2Q8NGC3 310 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 OR51H1Q8NH63 302 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 PRUNE2Q8WUY3 3088 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 SMIM4Q8WVI0 70 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 AQP3Q92482 292 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 EEF1AKMT3Q96AZ1 226 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 TM2D3Q9BRN9 247 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 RNF126Q9BV68 326 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 SPANXDQ9BXN6 97 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 POLR2J2Q9GZM3 115 aaKnown RBP2.38□□□□□ -2.03
CD44-217ENST00000525348 AICDAQ9GZX7 198 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 KCNE3Q9Y6H6 103 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 CUL9Q8IWT3 2517 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 ANAPC1Q9H1A4 1944 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 KIAA1671Q9BY89 1806 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 ZNF236Q9UL36 1845 aa2.38□□□□□ -2.03
CD44-217ENST00000525348 TRBV19A0A075B6N1 114 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms