RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 GPX7Q96SL4 187 aaPredicted RBP0.64□□□□□ -2.31
CD44-215ENST00000525241 PHB2Q99623 299 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 UFC1Q9Y3C8 167 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 RFX7Q2KHR2 1363 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 BCL9LQ86UU0 1499 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 CECR2Q9BXF3 1484 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 NBPF19A0A087WUL8 3843 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.64□□□□□ -2.31
CD44-215ENST00000525241 PTPRDP23468 1912 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 WDFY3Q8IZQ1 3526 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 DMXL1Q9Y485 3027 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 COL1A1P02452 1464 aaPredicted RBP0.63□□□□□ -2.31
CD44-215ENST00000525241 CAMSAP2Q08AD1 1489 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 FREM2Q5SZK8 3169 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 E5RI56 91 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 M0R2N4 97 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 GGCTO75223 188 aaKnown RBP0.63□□□□□ -2.31
CD44-215ENST00000525241 G0S2P27469 103 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 DYNLT3P51808 116 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 TAS2R41P59536 307 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 UBE2BP63146 152 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 EIF5AP63241 154 aaKnown RBP0.63□□□□□ -2.31
CD44-215ENST00000525241 SLC30A7Q8NEW0 376 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 OR2T10Q8NGZ9 312 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 SFT2D1Q8WV19 159 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 PATE1Q8WXA2 126 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 PLEKHB2Q96CS7 222 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 PBOV1Q9GZY1 135 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 SLC35A3Q9Y2D2 325 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 UTP11Q9Y3A2 253 aaKnown RBP0.63□□□□□ -2.31
CD44-215ENST00000525241 MYO15AQ9UKN7 3530 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 LAMA4Q16363 1823 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 NESP48681 1621 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 CICQ96RK0 1608 aaPredicted RBP0.63□□□□□ -2.31
CD44-215ENST00000525241 NINQ8N4C6 2090 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 MGAMO43451 1857 aa0.63□□□□□ -2.31
CD44-215ENST00000525241 KDM5AP29375 1690 aaKnown RBP0.62□□□□□ -2.31
CD44-215ENST00000525241 PPRC1Q5VV67 1664 aaKnown RBP0.62□□□□□ -2.31
CD44-215ENST00000525241 USP54Q70EL1 1684 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 SPTBP11277 2137 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 CITO14578 2027 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 MYH1P12882 1939 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 USH2AO75445 5202 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 VIRMAQ69YN4 1812 aaKnown RBP0.62□□□□□ -2.31
CD44-215ENST00000525241 KIAA1549LQ6ZVL6 1849 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 CSMD2Q7Z408 3487 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 A0A087WSZ3 146 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 TRGV10A0A0A0MS01 117 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 A8MWV9 139 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 H7C1C5 153 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 INE1O15225 51 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 NDUFB3O43676 98 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 TIMM17BO60830 172 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 PIAS1O75925 651 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 GADD45GO95257 159 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 TRGC2P03986 189 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 PHBP35232 272 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 ZNF93P35789 620 aaPredicted RBP0.62□□□□□ -2.31
CD44-215ENST00000525241 SRP14P37108 136 aaKnown RBP0.62□□□□□ -2.31
CD44-215ENST00000525241 RAB4BP61018 213 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 LCN6P62502 163 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 TMEM78Q5T7P6 136 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 ZNF833PQ6ZTB9 187 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 PHF5AQ7RTV0 110 aaKnown RBP0.62□□□□□ -2.31
CD44-215ENST00000525241 GRINAQ7Z429 371 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 LINC00301Q8NCQ3 95 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 NUP35Q8NFH5 326 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 OR10K1Q8NGX5 313 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 NEK7Q8TDX7 302 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 LINC00526Q96FQ7 95 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 YPEL2Q96QA6 119 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 PAIP2Q9BPZ3 127 aaKnown RBP0.62□□□□□ -2.31
CD44-215ENST00000525241 LINC00467Q9BRT7 94 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 RTL8AQ9BWD3 113 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 C14orf132Q9NPU4 83 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 PCTPQ9UKL6 214 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 ZFP30Q9Y2G7 519 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 TNS3Q68CZ2 1445 aa0.62□□□□□ -2.31
CD44-215ENST00000525241 YTHDC2Q9H6S0 1430 aaKnown RBP0.62□□□□□ -2.31
CD44-215ENST00000525241 DUXBA0A1W2PPF3 345 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 G3V2T6 193 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 SULT1B1O43704 296 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 DHFRP00374 187 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 HLA-EP13747 358 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 LTC4SQ16873 150 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 AKR1C8PQ5T2L2 129 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 KRTAP19-3Q7Z4W3 81 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 Q8N814 137 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 OR13C6PQ8NH95 151 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 SVEP1Q4LDE5 3571 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 ZZEF1O43149 2961 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 TECPR2O15040 1411 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 CENPEQ02224 2701 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 KNTC1P50748 2209 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 SPTBN2O15020 2390 aa0.61□□□□□ -2.31
CD44-215ENST00000525241 MAP1AP78559 2803 aaPredicted RBP0.6□□□□□ -2.31
CD44-215ENST00000525241 SPENQ96T58 3664 aaKnown RBP0.6□□□□□ -2.31
CD44-215ENST00000525241 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.6□□□□□ -2.31
CD44-215ENST00000525241 TRBV6-8A0A0A6YYG3 113 aa0.6□□□□□ -2.31
CD44-215ENST00000525241 TLCD2A6NGC4 264 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms