RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 IGLV2-11P01706 119 aa12.57□□□□□ -0.4
SQSTM1-213ENST00000510187 CFHR4Q92496 578 aa12.57□□□□□ -0.4
SQSTM1-213ENST00000510187 AJUBAQ96IF1 538 aa12.57□□□□□ -0.4
SQSTM1-213ENST00000510187 SGK494Q96LW2 274 aa12.57□□□□□ -0.4
SQSTM1-213ENST00000510187 M0R2Z0 102 aa12.57□□□□□ -0.4
SQSTM1-213ENST00000510187 FOXA3P55318 350 aaPredicted RBP12.57□□□□□ -0.4
SQSTM1-213ENST00000510187 CHCHD1Q96BP2 118 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-213ENST00000510187 SSBP4Q9BWG4 385 aaPredicted RBP12.57□□□□□ -0.4
SQSTM1-213ENST00000510187 ZFP30Q9Y2G7 519 aa12.57□□□□□ -0.4
SQSTM1-213ENST00000510187 K7EQM0 130 aa12.56□□□□□ -0.4
SQSTM1-213ENST00000510187 HAX1O00165 279 aa12.56□□□□□ -0.4
SQSTM1-213ENST00000510187 IGLC2P0DOY2 106 aa12.56□□□□□ -0.4
SQSTM1-213ENST00000510187 RNASEKQ6P5S7 137 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-213ENST00000510187 OR2D3Q8NGH3 330 aa12.56□□□□□ -0.4
SQSTM1-213ENST00000510187 CSPG4Q6UVK1 2322 aa12.56□□□□□ -0.4
SQSTM1-213ENST00000510187 WI2-2373I1.2A0A1W2PRP0 233 aa12.55□□□□□ -0.4
SQSTM1-213ENST00000510187 NPIPB5A8MRT5 1133 aa12.55□□□□□ -0.4
SQSTM1-213ENST00000510187 H3BTX0 84 aa12.55□□□□□ -0.4
SQSTM1-213ENST00000510187 PLXNB1O43157 2135 aa12.55□□□□□ -0.4
SQSTM1-213ENST00000510187 HLA-DRB1P01911 266 aa12.55□□□□□ -0.4
SQSTM1-213ENST00000510187 IGLC3P0DOY3 106 aa12.55□□□□□ -0.4
SQSTM1-213ENST00000510187 BTF3P20290 206 aaKnown RBP12.55□□□□□ -0.4
SQSTM1-213ENST00000510187 GOLT1AQ6ZVE7 132 aa12.55□□□□□ -0.4
SQSTM1-213ENST00000510187 RNF125Q96EQ8 232 aa12.55□□□□□ -0.4
SQSTM1-213ENST00000510187 PGLYRP4Q96LB8 373 aa12.55□□□□□ -0.4
SQSTM1-213ENST00000510187 C1RLQ9NZP8 487 aa12.55□□□□□ -0.4
SQSTM1-213ENST00000510187 CD5LO43866 347 aa12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 KRTAP1-1Q07627 177 aa12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 PDE6HQ13956 83 aa12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 C5orf64Q2M2E5 130 aa12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 SIGLEC15Q6ZMC9 328 aa12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 ZNF491Q8N8L2 437 aa12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 NDFIP1Q9BT67 221 aa12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 CELSR1Q9NYQ6 3014 aa12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 A0A1B0GW15 77 aa12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 MRPS12O15235 138 aaKnown RBP12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 CD24P25063 80 aa12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 PRNTQ86SH4 94 aa12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 EXOC3-AS1Q8N2X6 119 aa12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 GATD1Q8NB37 220 aa12.54□□□□□ -0.4
SQSTM1-213ENST00000510187 LOC102724200A0A096LPH7 203 aaPredicted RBP12.53□□□□□ -0.4
SQSTM1-213ENST00000510187 SERTM2A0A1B0GWG4 89 aa12.53□□□□□ -0.4
SQSTM1-213ENST00000510187 C2orf70A6NJV1 201 aa12.53□□□□□ -0.4
SQSTM1-213ENST00000510187 APOHP02749 345 aaPredicted RBP12.53□□□□□ -0.4
SQSTM1-213ENST00000510187 HES1Q14469 280 aa12.53□□□□□ -0.4
SQSTM1-213ENST00000510187 Q6AWC8 147 aa12.53□□□□□ -0.4
SQSTM1-213ENST00000510187 TEX15Q9BXT5 2789 aa12.52□□□□□ -0.4
SQSTM1-213ENST00000510187 IGLV11-55A0A075B6I3 123 aa12.52□□□□□ -0.41
SQSTM1-213ENST00000510187 TRAV9-2A0A087WT02 112 aa12.52□□□□□ -0.41
SQSTM1-213ENST00000510187 TRAV8-1A0A0A6YYK1 113 aa12.52□□□□□ -0.41
SQSTM1-213ENST00000510187 CHEK1O14757 476 aa12.52□□□□□ -0.41
SQSTM1-213ENST00000510187 FSHBP01225 129 aa12.52□□□□□ -0.41
SQSTM1-213ENST00000510187 EBLN2Q6P2I7 272 aa12.52□□□□□ -0.41
SQSTM1-213ENST00000510187 ARL6IP6Q8N6S5 226 aa12.52□□□□□ -0.41
SQSTM1-213ENST00000510187 URB1-AS1Q96HZ7 61 aa12.52□□□□□ -0.41
SQSTM1-213ENST00000510187 IL4P05112 153 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 MFAP4P55083 255 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 GAGE1Q13065 139 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 PSG3Q16557 428 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 COL5A1-AS1Q5SY13 56 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 ZNF562Q6V9R5 426 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 ZNF414Q96IQ9 312 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 MEGF9Q9H1U4 602 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 YAE1D1Q9NRH1 226 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 PSG8Q9UQ74 426 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 OTOGQ6ZRI0 2925 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 ACANP16112 2415 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 CRXO43186 299 aaPredicted RBP12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 SCGB2A1O75556 95 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 OR5AL1P0C617 328 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 FAM106CPP0CH98 169 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 RIGQ13278 110 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 FAM120AOSQ5T036 256 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 TTC9CQ8N5M4 171 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 TEX29Q8N6K0 151 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 ARPC1AQ92747 370 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 TXN2Q99757 166 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 TMEM70Q9BUB7 260 aa12.51□□□□□ -0.41
SQSTM1-213ENST00000510187 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.5□□□□□ -0.41
SQSTM1-213ENST00000510187 A0A1B0GUT8 65 aa12.5□□□□□ -0.41
SQSTM1-213ENST00000510187 GNG7O60262 68 aa12.5□□□□□ -0.41
SQSTM1-213ENST00000510187 HNRNPA3P51991 378 aaKnown RBP12.5□□□□□ -0.41
SQSTM1-213ENST00000510187 BCL6BQ8N143 479 aaPredicted RBP12.5□□□□□ -0.41
SQSTM1-213ENST00000510187 ZC2HC1AQ96GY0 325 aa12.5□□□□□ -0.41
SQSTM1-213ENST00000510187 FANCD2OSQ96PS1 177 aa12.5□□□□□ -0.41
SQSTM1-213ENST00000510187 TLN2Q9Y4G6 2542 aa12.5□□□□□ -0.41
SQSTM1-213ENST00000510187 FBLL1A6NHQ2 334 aaKnown RBP12.49□□□□□ -0.41
SQSTM1-213ENST00000510187 SH2D7A6NKC9 451 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-213ENST00000510187 ZNF785A8K8V0 405 aa12.49□□□□□ -0.41
SQSTM1-213ENST00000510187 EBI3Q14213 229 aa12.49□□□□□ -0.41
SQSTM1-213ENST00000510187 FBLN7Q53RD9 439 aa12.49□□□□□ -0.41
SQSTM1-213ENST00000510187 LCN12Q6JVE5 192 aa12.49□□□□□ -0.41
SQSTM1-213ENST00000510187 Q6ZN92 141 aa12.49□□□□□ -0.41
SQSTM1-213ENST00000510187 IL17RELQ6ZVW7 336 aa12.49□□□□□ -0.41
SQSTM1-213ENST00000510187 Q8N6K4 173 aa12.49□□□□□ -0.41
SQSTM1-213ENST00000510187 SMR3AQ99954 134 aa12.49□□□□□ -0.41
SQSTM1-213ENST00000510187 MRPS16Q9Y3D3 137 aaKnown RBP12.49□□□□□ -0.41
SQSTM1-213ENST00000510187 TMEM11P17152 192 aa12.48□□□□□ -0.41
SQSTM1-213ENST00000510187 AAMDCQ9H7C9 122 aa12.48□□□□□ -0.41
SQSTM1-213ENST00000510187 THYN1Q9P016 225 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms