RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 NUPR2A6NF83 97 aa11.52□□□□□ -0.57
LIME1-209ENST00000494776 SMIM9A6NGZ8 99 aa11.52□□□□□ -0.57
LIME1-209ENST00000494776 INSP01308 110 aa11.52□□□□□ -0.57
LIME1-209ENST00000494776 M6PRP20645 277 aa11.52□□□□□ -0.57
LIME1-209ENST00000494776 KHDC3LQ587J8 217 aa11.52□□□□□ -0.57
LIME1-209ENST00000494776 NEU1Q99519 415 aa11.52□□□□□ -0.57
LIME1-209ENST00000494776 PRELID1Q9Y255 219 aa11.52□□□□□ -0.57
LIME1-209ENST00000494776 TRAV12-2A0A075B6T6 113 aa11.51□□□□□ -0.57
LIME1-209ENST00000494776 BORCS7-ASMTA0A0B4J1R7 106 aa11.51□□□□□ -0.57
LIME1-209ENST00000494776 RNF222A6NCQ9 220 aa11.51□□□□□ -0.57
LIME1-209ENST00000494776 PRAC2D3DTV9 90 aa11.51□□□□□ -0.57
LIME1-209ENST00000494776 NDUFB4O95168 129 aa11.51□□□□□ -0.57
LIME1-209ENST00000494776 HBE1P02100 147 aa11.51□□□□□ -0.57
LIME1-209ENST00000494776 BAP18Q8IXM2 172 aa11.51□□□□□ -0.57
LIME1-209ENST00000494776 C1orf158Q8N1D5 194 aa11.51□□□□□ -0.57
LIME1-209ENST00000494776 EXOC3-AS1Q8N2X6 119 aa11.51□□□□□ -0.57
LIME1-209ENST00000494776 OR10G4Q8NGN3 311 aa11.51□□□□□ -0.57
LIME1-209ENST00000494776 OR10G9Q8NGN4 311 aa11.51□□□□□ -0.57
LIME1-209ENST00000494776 OR10G7Q8NGN6 311 aa11.51□□□□□ -0.57
LIME1-209ENST00000494776 MRPL53Q96EL3 112 aaKnown RBP11.51□□□□□ -0.57
LIME1-209ENST00000494776 TMEM189A5PLL7 270 aa11.5□□□□□ -0.57
LIME1-209ENST00000494776 M0R3E3 92 aa11.5□□□□□ -0.57
LIME1-209ENST00000494776 ARPC5O15511 151 aa11.5□□□□□ -0.57
LIME1-209ENST00000494776 ATP6V0CP27449 155 aa11.5□□□□□ -0.57
LIME1-209ENST00000494776 EMP1P54849 157 aa11.5□□□□□ -0.57
LIME1-209ENST00000494776 RAB2AP61019 212 aa11.5□□□□□ -0.57
LIME1-209ENST00000494776 UBE2L3P68036 154 aaKnown RBP11.5□□□□□ -0.57
LIME1-209ENST00000494776 ICAM4Q14773 271 aa11.5□□□□□ -0.57
LIME1-209ENST00000494776 FAM122CQ6P4D5 195 aa11.5□□□□□ -0.57
LIME1-209ENST00000494776 CEMP1Q6PRD7 247 aaPredicted RBP11.5□□□□□ -0.57
LIME1-209ENST00000494776 PHLDA1Q8WV24 401 aaPredicted RBP11.5□□□□□ -0.57
LIME1-209ENST00000494776 FXYD5Q96DB9 178 aa11.5□□□□□ -0.57
LIME1-209ENST00000494776 KLK5Q9Y337 293 aaPredicted RBP11.5□□□□□ -0.57
LIME1-209ENST00000494776 SMLR1H3BR10 107 aa11.49□□□□□ -0.57
LIME1-209ENST00000494776 TSPOP30536 169 aa11.49□□□□□ -0.57
LIME1-209ENST00000494776 CDKN1BP46527 198 aa11.49□□□□□ -0.57
LIME1-209ENST00000494776 RRN3P1Q2M238 152 aa11.49□□□□□ -0.57
LIME1-209ENST00000494776 PSMG3Q9BT73 122 aaPredicted RBP11.49□□□□□ -0.57
LIME1-209ENST00000494776 G3V3Q6 166 aa11.48□□□□□ -0.57
LIME1-209ENST00000494776 CRXO43186 299 aaPredicted RBP11.48□□□□□ -0.57
LIME1-209ENST00000494776 EIF3GO75821 320 aaKnown RBP eCLIP11.48□□□□□ -0.57
LIME1-209ENST00000494776 MBP02144 154 aa11.48□□□□□ -0.57
LIME1-209ENST00000494776 RANP62826 216 aaKnown RBP11.48□□□□□ -0.57
LIME1-209ENST00000494776 SERF2P84101 59 aa11.48□□□□□ -0.57
LIME1-209ENST00000494776 RPL7L1Q6DKI1 246 aaKnown RBP11.48□□□□□ -0.57
LIME1-209ENST00000494776 RPP25LQ8N5L8 163 aaKnown RBP11.48□□□□□ -0.57
LIME1-209ENST00000494776 OR2G3Q8NGZ4 309 aa11.48□□□□□ -0.57
LIME1-209ENST00000494776 GNPNAT1Q96EK6 184 aaPredicted RBP11.48□□□□□ -0.57
LIME1-209ENST00000494776 PHYHIPLQ96FC7 376 aa11.48□□□□□ -0.57
LIME1-209ENST00000494776 LINC01587Q99440 93 aa11.48□□□□□ -0.57
LIME1-209ENST00000494776 LOC102723971A0A1B0GUV8 181 aa11.47□□□□□ -0.57
LIME1-209ENST00000494776 NPIPB6E9PJ23 425 aa11.47□□□□□ -0.57
LIME1-209ENST00000494776 J3KRW8 73 aa11.47□□□□□ -0.57
LIME1-209ENST00000494776 TAAR5O14804 337 aa11.47□□□□□ -0.57
LIME1-209ENST00000494776 HMGB3O15347 200 aaKnown RBP11.47□□□□□ -0.57
LIME1-209ENST00000494776 JTBO76095 146 aa11.47□□□□□ -0.57
LIME1-209ENST00000494776 LEPP41159 167 aa11.47□□□□□ -0.57
LIME1-209ENST00000494776 CSN1S1P47710 185 aa11.47□□□□□ -0.57
LIME1-209ENST00000494776 CDC34P49427 236 aaPredicted RBP11.47□□□□□ -0.57
LIME1-209ENST00000494776 PQLC2Q6ZP29 291 aa11.47□□□□□ -0.57
LIME1-209ENST00000494776 ZNF503Q96F45 646 aa11.47□□□□□ -0.57
LIME1-209ENST00000494776 SH3BGRL3Q9H299 93 aa11.47□□□□□ -0.57
LIME1-209ENST00000494776 ZNF705GA8MUZ8 300 aaPredicted RBP11.46□□□□□ -0.57
LIME1-209ENST00000494776 SPART-AS1P0CW21 52 aa11.46□□□□□ -0.57
LIME1-209ENST00000494776 CT45A10P0DMU9 189 aa11.46□□□□□ -0.57
LIME1-209ENST00000494776 HTN1P15515 57 aa11.46□□□□□ -0.57
LIME1-209ENST00000494776 ERCC8Q13216 396 aa11.46□□□□□ -0.57
LIME1-209ENST00000494776 LYPD1Q8N2G4 141 aa11.46□□□□□ -0.57
LIME1-209ENST00000494776 TMEM256Q8N2U0 113 aa11.46□□□□□ -0.57
LIME1-209ENST00000494776 Q9H3A6 140 aa11.46□□□□□ -0.57
LIME1-209ENST00000494776 CELA1Q9UNI1 258 aa11.46□□□□□ -0.57
LIME1-209ENST00000494776 C11orf94C9JXX5 98 aa11.45□□□□□ -0.58
LIME1-209ENST00000494776 TMEM78Q5T7P6 136 aa11.45□□□□□ -0.58
LIME1-209ENST00000494776 ZNF767PQ75MW2 155 aa11.45□□□□□ -0.58
LIME1-209ENST00000494776 LINC00477Q96M19 166 aa11.45□□□□□ -0.58
LIME1-209ENST00000494776 ODF3Q96PU9 254 aa11.45□□□□□ -0.58
LIME1-209ENST00000494776 DYNC2H1Q8NCM8 4307 aaKnown RBP11.44□□□□□ -0.58
LIME1-209ENST00000494776 IGKV2-40A0A087WW87 121 aaPredicted RBP11.44□□□□□ -0.58
LIME1-209ENST00000494776 LCE6AA0A183 80 aa11.44□□□□□ -0.58
LIME1-209ENST00000494776 TEX48A0A1B0GUV7 120 aa11.44□□□□□ -0.58
LIME1-209ENST00000494776 IGKV2D-40P01614 121 aaPredicted RBP11.44□□□□□ -0.58
LIME1-209ENST00000494776 FAM74A1Q5RGS3 127 aa11.44□□□□□ -0.58
LIME1-209ENST00000494776 Q6ZTC4 211 aa11.44□□□□□ -0.58
LIME1-209ENST00000494776 RAB24Q969Q5 203 aa11.44□□□□□ -0.58
LIME1-209ENST00000494776 HYLS1Q96M11 299 aa11.44□□□□□ -0.58
LIME1-209ENST00000494776 C20orf144Q9BQM9 153 aa11.44□□□□□ -0.58
LIME1-209ENST00000494776 ACTR3CQ9C0K3 210 aaPredicted RBP11.44□□□□□ -0.58
LIME1-209ENST00000494776 AGPAT4-IT1Q9H0P7 198 aa11.44□□□□□ -0.58
LIME1-209ENST00000494776 YTHDF2Q9Y5A9 579 aaKnown RBP11.44□□□□□ -0.58
LIME1-209ENST00000494776 TRAV10A0A0B4J240 114 aa11.43□□□□□ -0.58
LIME1-209ENST00000494776 PRM2P04554 102 aa11.43□□□□□ -0.58
LIME1-209ENST00000494776 ARL14EPLP0DKL9 152 aa11.43□□□□□ -0.58
LIME1-209ENST00000494776 TAS2R60P59551 318 aa11.43□□□□□ -0.58
LIME1-209ENST00000494776 KIR3DS1Q14943 382 aa11.43□□□□□ -0.58
LIME1-209ENST00000494776 C12orf74Q32Q52 190 aa11.43□□□□□ -0.58
LIME1-209ENST00000494776 FAM222AQ5U5X8 452 aa11.43□□□□□ -0.58
LIME1-209ENST00000494776 GFI1BQ5VTD9 330 aa11.43□□□□□ -0.58
LIME1-209ENST00000494776 C9orf47Q6ZRZ4 202 aa11.43□□□□□ -0.58
LIME1-209ENST00000494776 CMTM2Q8TAZ6 248 aa11.43□□□□□ -0.58
LIME1-209ENST00000494776 RXFP4Q8TDU9 374 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms