RNA–Protein interactions for RNA: ENST00000492954.1

PTPRU-207, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 2

Gene PTPRU, Length 625 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-207ENST00000492954 FAM210BQ96KR6 192 aa12.78□□□□□ -0.36
PTPRU-207ENST00000492954 PARD6GQ9BYG4 376 aaPredicted RBP12.78□□□□□ -0.36
PTPRU-207ENST00000492954 NMES1Q9C002 83 aa12.78□□□□□ -0.36
PTPRU-207ENST00000492954 ZNF586Q9NXT0 402 aa12.78□□□□□ -0.36
PTPRU-207ENST00000492954 PLAC8L1A1L4L8 177 aa12.77□□□□□ -0.37
PTPRU-207ENST00000492954 E5RGE8 158 aa12.77□□□□□ -0.37
PTPRU-207ENST00000492954 H0YIZ8 118 aa12.77□□□□□ -0.37
PTPRU-207ENST00000492954 MPDU1O75352 247 aa12.77□□□□□ -0.37
PTPRU-207ENST00000492954 RLN2P04090 185 aa12.77□□□□□ -0.37
PTPRU-207ENST00000492954 KIR3DS1Q14943 382 aa12.77□□□□□ -0.37
PTPRU-207ENST00000492954 GUK1Q16774 197 aa12.77□□□□□ -0.37
PTPRU-207ENST00000492954 GCSAMLQ5JQS6 135 aa12.77□□□□□ -0.37
PTPRU-207ENST00000492954 POM121L12Q8N7R1 296 aa12.77□□□□□ -0.37
PTPRU-207ENST00000492954 OR5C1Q8NGR4 320 aa12.77□□□□□ -0.37
PTPRU-207ENST00000492954 NPCDR1Q9BY65 106 aa12.77□□□□□ -0.37
PTPRU-207ENST00000492954 LYRM9A8MSI8 78 aa12.76□□□□□ -0.37
PTPRU-207ENST00000492954 HTN1P15515 57 aa12.76□□□□□ -0.37
PTPRU-207ENST00000492954 TAS2R60P59551 318 aa12.76□□□□□ -0.37
PTPRU-207ENST00000492954 FCN2Q15485 313 aa12.76□□□□□ -0.37
PTPRU-207ENST00000492954 MARVELD1Q9BSK0 173 aa12.76□□□□□ -0.37
PTPRU-207ENST00000492954 SLC25A31Q9H0C2 315 aa12.76□□□□□ -0.37
PTPRU-207ENST00000492954 H2BFSP57053 126 aa12.75□□□□□ -0.37
PTPRU-207ENST00000492954 CLINT1Q14677 625 aa12.75□□□□□ -0.37
PTPRU-207ENST00000492954 TMEM88Q6PEY1 159 aa12.75□□□□□ -0.37
PTPRU-207ENST00000492954 TRBV19A0A075B6N1 114 aa12.74□□□□□ -0.37
PTPRU-207ENST00000492954 ZNF253O75346 499 aa12.74□□□□□ -0.37
PTPRU-207ENST00000492954 DEFB130BP0DP73 79 aa12.74□□□□□ -0.37
PTPRU-207ENST00000492954 DEFB130AP0DP74 79 aa12.74□□□□□ -0.37
PTPRU-207ENST00000492954 PYYP10082 97 aa12.74□□□□□ -0.37
PTPRU-207ENST00000492954 CYCSP99999 105 aaKnown RBP12.74□□□□□ -0.37
PTPRU-207ENST00000492954 GFI1BQ5VTD9 330 aa12.74□□□□□ -0.37
PTPRU-207ENST00000492954 TMEM14CQ9P0S9 112 aa12.74□□□□□ -0.37
PTPRU-207ENST00000492954 J3KRW8 73 aa12.73□□□□□ -0.37
PTPRU-207ENST00000492954 CT45A10P0DMU9 189 aa12.73□□□□□ -0.37
PTPRU-207ENST00000492954 HIST1H1EP10412 219 aaKnown RBP12.73□□□□□ -0.37
PTPRU-207ENST00000492954 DEFA1P59665 94 aa12.73□□□□□ -0.37
PTPRU-207ENST00000492954 DEFA3P59666 94 aa12.73□□□□□ -0.37
PTPRU-207ENST00000492954 PPP1R1CQ8WVI7 109 aa12.73□□□□□ -0.37
PTPRU-207ENST00000492954 C16orf74Q96GX8 76 aa12.73□□□□□ -0.37
PTPRU-207ENST00000492954 NPIPB6E9PJ23 425 aa12.72□□□□□ -0.37
PTPRU-207ENST00000492954 H7BYZ3 331 aa12.72□□□□□ -0.37
PTPRU-207ENST00000492954 M0R3E3 92 aa12.72□□□□□ -0.37
PTPRU-207ENST00000492954 SSNA1O43805 119 aa12.72□□□□□ -0.37
PTPRU-207ENST00000492954 NDUFB4O95168 129 aa12.72□□□□□ -0.37
PTPRU-207ENST00000492954 RNASE8Q8TDE3 154 aaKnown RBP12.72□□□□□ -0.37
PTPRU-207ENST00000492954 C20orf144Q9BQM9 153 aa12.72□□□□□ -0.37
PTPRU-207ENST00000492954 SLC25A2Q9BXI2 301 aa12.72□□□□□ -0.37
PTPRU-207ENST00000492954 HECTD4Q9Y4D8 3996 aa12.71□□□□□ -0.37
PTPRU-207ENST00000492954 MIR17HGQ75NE6 70 aa12.71□□□□□ -0.37
PTPRU-207ENST00000492954 UBE2DNLQ8IWF7 75 aa12.71□□□□□ -0.37
PTPRU-207ENST00000492954 TMEM263Q8WUH6 116 aaKnown RBP12.71□□□□□ -0.37
PTPRU-207ENST00000492954 BLNKQ8WV28 456 aa12.71□□□□□ -0.37
PTPRU-207ENST00000492954 MRPL53Q96EL3 112 aaKnown RBP12.71□□□□□ -0.37
PTPRU-207ENST00000492954 ODF3Q96PU9 254 aa12.71□□□□□ -0.37
PTPRU-207ENST00000492954 WDR61Q9GZS3 305 aaKnown RBP12.71□□□□□ -0.37
PTPRU-207ENST00000492954 TIMM9Q9Y5J7 89 aa12.71□□□□□ -0.37
PTPRU-207ENST00000492954 TIMM8BQ9Y5J9 83 aaPredicted RBP12.71□□□□□ -0.37
PTPRU-207ENST00000492954 M0R2N4 97 aa12.7□□□□□ -0.38
PTPRU-207ENST00000492954 LEPP41159 167 aa12.7□□□□□ -0.38
PTPRU-207ENST00000492954 ERCC8Q13216 396 aa12.7□□□□□ -0.38
PTPRU-207ENST00000492954 PDE6HQ13956 83 aa12.7□□□□□ -0.38
PTPRU-207ENST00000492954 ZNF493Q6ZR52 646 aa12.7□□□□□ -0.38
PTPRU-207ENST00000492954 EXOC3-AS1Q8N2X6 119 aa12.7□□□□□ -0.38
PTPRU-207ENST00000492954 FAM167A-AS1Q96KT0 104 aa12.7□□□□□ -0.38
PTPRU-207ENST00000492954 NOP10Q9NPE3 64 aaKnown RBP12.7□□□□□ -0.38
PTPRU-207ENST00000492954 TRAV12-3A0A0B4J271 114 aa12.69□□□□□ -0.38
PTPRU-207ENST00000492954 F5H768 121 aa12.69□□□□□ -0.38
PTPRU-207ENST00000492954 MPC2O95563 127 aa12.69□□□□□ -0.38
PTPRU-207ENST00000492954 KCNIP2Q9NS61 270 aa12.69□□□□□ -0.38
PTPRU-207ENST00000492954 PRELID1Q9Y255 219 aa12.69□□□□□ -0.38
PTPRU-207ENST00000492954 DNAH2Q9P225 4427 aa12.69□□□□□ -0.38
PTPRU-207ENST00000492954 ATP5G1P05496 136 aa12.68□□□□□ -0.38
PTPRU-207ENST00000492954 ATP5G3P48201 142 aa12.68□□□□□ -0.38
PTPRU-207ENST00000492954 CCDC28AQ8IWP9 274 aa12.68□□□□□ -0.38
PTPRU-207ENST00000492954 C15orf53Q8NAA6 179 aa12.68□□□□□ -0.38
PTPRU-207ENST00000492954 ATP5SQ99766 215 aa12.68□□□□□ -0.38
PTPRU-207ENST00000492954 BATF3Q9NR55 127 aa12.68□□□□□ -0.38
PTPRU-207ENST00000492954 HSPB11Q9Y547 144 aa12.68□□□□□ -0.38
PTPRU-207ENST00000492954 IGLV2-18A0A075B6J9 118 aa12.67□□□□□ -0.38
PTPRU-207ENST00000492954 CBY3A6NI87 242 aa12.67□□□□□ -0.38
PTPRU-207ENST00000492954 PET100P0DJ07 73 aa12.67□□□□□ -0.38
PTPRU-207ENST00000492954 ICAM4Q14773 271 aa12.67□□□□□ -0.38
PTPRU-207ENST00000492954 OR51M1Q9H341 326 aa12.67□□□□□ -0.38
PTPRU-207ENST00000492954 AAMDCQ9H7C9 122 aa12.67□□□□□ -0.38
PTPRU-207ENST00000492954 MBD2Q9UBB5 411 aa12.67□□□□□ -0.38
PTPRU-207ENST00000492954 IGKV2-40A0A087WW87 121 aaPredicted RBP12.66□□□□□ -0.38
PTPRU-207ENST00000492954 C17orf112F2Z3M2 114 aa12.66□□□□□ -0.38
PTPRU-207ENST00000492954 IGKV2D-40P01614 121 aaPredicted RBP12.66□□□□□ -0.38
PTPRU-207ENST00000492954 OR10J4P0C629 311 aa12.66□□□□□ -0.38
PTPRU-207ENST00000492954 NBEAP1P0C6P0 100 aa12.66□□□□□ -0.38
PTPRU-207ENST00000492954 RNF212Q495C1 297 aa12.66□□□□□ -0.38
PTPRU-207ENST00000492954 FAM122CQ6P4D5 195 aa12.66□□□□□ -0.38
PTPRU-207ENST00000492954 PAXXQ9BUH6 204 aa12.66□□□□□ -0.38
PTPRU-207ENST00000492954 MRPL32Q9BYC8 188 aaKnown RBP12.66□□□□□ -0.38
PTPRU-207ENST00000492954 SMIM3Q9BZL3 60 aa12.66□□□□□ -0.38
PTPRU-207ENST00000492954 AGPAT4-IT1Q9H0P7 198 aa12.66□□□□□ -0.38
PTPRU-207ENST00000492954 FUT9Q9Y231 359 aa12.66□□□□□ -0.38
PTPRU-207ENST00000492954 FAT2Q9NYQ8 4349 aa12.66□□□□□ -0.38
PTPRU-207ENST00000492954 C7orf71A4D174 169 aa12.65□□□□□ -0.38
PTPRU-207ENST00000492954 SLC25A5P05141 298 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms