RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 EEF1AKMT3Q96AZ1 226 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 SLC25A39Q9BZJ4 359 aaPredicted RBP4.24□□□□□ -1.73
SYNE1-220ENST00000471834 BDP1A6H8Y1 2624 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 IGHV3OR16-13A0A075B7E8 117 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 IGHV3-74A0A0B4J1X5 117 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 KBTBD11-OT1A0A1B0GTJ5 212 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 IGFBP2P18065 325 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 CMC4P56277 68 aaPredicted RBP4.24□□□□□ -1.73
SYNE1-220ENST00000471834 MIR17HGQ75NE6 70 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 GAGE12BA1L429 117 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 PEX7O00628 323 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 RPL8P62917 257 aaKnown RBP4.24□□□□□ -1.73
SYNE1-220ENST00000471834 FOXE3Q13461 319 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 A0A0C4DFX4 3053 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 IGHV3OR16-8A0A075B7F1 116 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 WI2-2373I1.2A0A1W2PRP0 233 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 GAGE10A6NGK3 116 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 SAP30O75446 220 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 PRB1P04280 392 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 RPL27AP46776 148 aaKnown RBP4.24□□□□□ -1.73
SYNE1-220ENST00000471834 NPC2P61916 151 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 ZNF562Q6V9R5 426 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 RNF183Q96D59 192 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 SLC25A2Q9BXI2 301 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 APRG1Q8IVJ8 170 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 FER1L6-AS1Q8NA97 138 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 VKORC1Q9BQB6 163 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 EPDR1Q9UM22 224 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 MFAP4P55083 255 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 BSPH1Q075Z2 132 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 MORN5Q5VZ52 161 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 FDCSPQ8NFU4 85 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 ZNRF2Q8NHG8 242 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 ZNF430Q9H8G1 570 aaPredicted RBP4.24□□□□□ -1.73
SYNE1-220ENST00000471834 B4DSR2 109 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 CLEC19AQ6UXS0 136 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 SPTA1P02549 2419 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 TRBV7-9A0A0J9YWB2 115 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 NBR2O15453 112 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 FABP2P12104 132 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 LCN12Q6JVE5 192 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 MRAP2Q96G30 205 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 CRPP02741 224 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 SMIM13P0DJ93 91 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 PRSS33Q8NF86 280 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 OR2K2Q8NGT1 345 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 RPP21Q9H633 154 aaKnown RBP4.23□□□□□ -1.73
SYNE1-220ENST00000471834 MRPL36Q9P0J6 103 aaKnown RBP4.23□□□□□ -1.73
SYNE1-220ENST00000471834 MOB4Q9Y3A3 225 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 RNF223E7ERA6 249 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 K7EMI3 77 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 IGKV1-17P01599 117 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 MEIG1Q5JSS6 88 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 ITLN2Q8WWU7 325 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-220ENST00000471834 NDUFS7O75251 213 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 IL17RELQ6ZVW7 336 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 OR13C6PQ8NH95 151 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 FAM57AQ8TBR7 257 aa4.23□□□□□ -1.73
SYNE1-220ENST00000471834 IGHV3-64A0A075B6Q5 118 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 PRSS2P07478 247 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 IGHV1-2P23083 117 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 TRAV3A0A0B4J244 114 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 LEPROTL1O95214 131 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 TTC32Q5I0X7 151 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 ARPC1AQ92747 370 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 DUX3Q96PT4 197 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 CD24P25063 80 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 LDLRAD2Q5SZI1 272 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 RNF152Q8N8N0 203 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 LINC01356Q8N9X3 169 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 FMC1Q96HJ9 113 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 TRIOBPQ9H2D6 2365 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 MBD3L4A6NDZ8 208 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-220ENST00000471834 MBD3L3A6NE82 208 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-220ENST00000471834 MBD3L5A6NJ08 208 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-220ENST00000471834 LEPP41159 167 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 FXYD7P58549 80 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 UBE2D3P61077 147 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 UBE2D2P62837 147 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 EBI3Q14213 229 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 MYO7BQ6PIF6 2116 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 ZNF474Q6S9Z5 364 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-220ENST00000471834 SIGLEC15Q6ZMC9 328 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 FAM19A2Q8N3H0 131 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 MBD3L2Q8NHZ7 208 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-220ENST00000471834 ASCL2Q99929 193 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 TRAV12-1A0A0B4J245 112 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 NXPH4O95158 308 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 SAA1P0DJI8 122 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-220ENST00000471834 GATA2P23769 480 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-220ENST00000471834 RNASE7Q9H1E1 156 aaKnown RBP4.22□□□□□ -1.73
SYNE1-220ENST00000471834 MRPL16Q9NX20 251 aaKnown RBP4.22□□□□□ -1.73
SYNE1-220ENST00000471834 TRBV7-3A0A075B6L6 115 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 TRGV3P03979 118 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 IL4P05112 153 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 ODF1Q14990 250 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 PGPEP1Q9NXJ5 209 aa4.22□□□□□ -1.73
SYNE1-220ENST00000471834 FAM27E3Q08E93 113 aa4.21□□□□□ -1.73
SYNE1-220ENST00000471834 TMEM75Q8N9X5 138 aa4.21□□□□□ -1.73
SYNE1-220ENST00000471834 SPANXB1Q9NS25 103 aaPredicted RBP4.21□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms