RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CBLN1P23435 193 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 FUSP35637 526 aaKnown RBP eCLIP3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 LGALSLQ3ZCW2 172 aaPredicted RBP3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 LUZP6Q538Z0 58 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 FAM216BQ8N7L0 139 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 C15orf53Q8NAA6 179 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 CLDND2Q8NHS1 167 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 C1orf147Q96MC9 270 aaPredicted RBP3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 TNFRSF19Q9NS68 423 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 SPCS1Q9Y6A9 102 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 ALPK3Q96L96 1907 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 ECM29Q5VYK3 1845 aa3.28□□□□□ -1.88
CCDC88A-210ENST00000468534 ANKARQ7Z5J8 1434 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 PIK3C2AO00443 1686 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 CCDC88AQ3V6T2 1871 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 NUP210LQ5VU65 1888 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 IGHV3-21A0A0B4J1V1 117 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 A6NN06 94 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 A8MU10 97 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 ZNF737O75373 536 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 IGLV3-25P01717 112 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 IGHV3-7P01780 117 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 SHBGP04278 402 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 RPS10P46783 165 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 FAM78AQ5JUQ0 283 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 BVES-AS1Q5T3Y7 98 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 Q8N377 158 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 SIGLECL1Q8N7X8 197 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 OR2T35Q8NGX2 323 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 CCL4L1Q8NHW4 92 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 TSKUQ8WUA8 353 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 PMCHL2Q9BQD1 86 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 CHCHD7Q9BUK0 85 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 TTTY13Q9BZ97 58 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 TMEM242Q9NWH2 141 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 TAS2R4Q9NYW5 299 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 SCN2AQ99250 2005 aa3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 MARF1Q9Y4F3 1742 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-210ENST00000468534 DIP2BQ9P265 1576 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 ABCC2Q92887 1545 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 UGGT2Q9NYU1 1516 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 MYH9P35579 1960 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 IGHV3-49A0A0A0MS15 119 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 IGHV5-10-1A0A0J9YXX1 117 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 A0A1W2PPM0 123 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 PINLYPA6NC86 204 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 SDCBPO00560 298 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 TIMM17BO60830 172 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 IGKCP01834 107 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 ZNF688P0C7X2 276 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 SSR2P43308 183 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 FXYD7P58549 80 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 CIRBPQ14011 172 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 ZFP2Q6ZN57 461 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 ATP11AUNQ6ZP68 121 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 C5orf38Q86SI9 138 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 AMN1Q8IY45 258 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 OR10AG1Q8NH19 301 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 GTSF1Q8WW33 167 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 PPDPFLQ8WWR9 84 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 SCGB3A1Q96QR1 104 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 AMELYQ99218 206 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 C10orf71Q711Q0 1435 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 NOTCH2Q04721 2471 aa3.26□□□□□ -1.89
CCDC88A-210ENST00000468534 EPRSP07814 1512 aaKnown RBP3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 TOP2AP11388 1531 aaKnown RBP3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 IGHV5-51A0A0C4DH38 117 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 UBE2L5PA0A1B0GUS4 154 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 E7EQL1 145 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 K7ERS5 55 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 SOCS3O14543 225 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 BPY2O14599 106 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 SAA1P0DJI8 122 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 ATP5EP56381 51 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 DYNLT1P63172 113 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 UBE2L3P68036 154 aaKnown RBP3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 ASB16-AS1Q495Z4 193 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 C12orf73Q69YU5 71 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 C16orf47Q6ZP98 133 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 ADM2Q7Z4H4 148 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 TMEM256Q8N2U0 113 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 Q8N8P6 123 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 C20orf203Q8NBC4 194 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 PFN4Q8NHR9 129 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 MYOZ3Q8TDC0 251 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 UPK3BQ9BT76 320 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 NDUFB11Q9NX14 153 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 LY96Q9Y6Y9 160 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 PREX2Q70Z35 1606 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 TRPM1Q7Z4N2 1603 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 CC2D2AQ9P2K1 1620 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 COL18A1P39060 1754 aa3.25□□□□□ -1.89
CCDC88A-210ENST00000468534 KIF13AQ9H1H9 1805 aa3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 MROH1Q8NDA8 1641 aa3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 A0A1B0GVX0 72 aa3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 A0A1W2PP18 115 aa3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 IGHV1-8P0DP01 117 aa3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 PTHLHP12272 177 aa3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 NFYAP23511 347 aaPredicted RBP3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms