RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 NPY1RP25929 384 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 PSMB8P28062 276 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 TSPOP30536 169 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 HSPE1P61604 102 aaKnown RBP6.07□□□□□ -1.44
USP4-207ENST00000462673 UBE2G1P62253 170 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 RBX1P62877 108 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 TDRG1Q3Y452 100 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 FBLN7Q53RD9 439 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 SPINK9Q5DT21 86 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 TEPPQ6URK8 271 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 NIT1Q86X76 327 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 RNF152Q8N8N0 203 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 OR4C5Q8NGB2 326 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 DPF1Q92782 380 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 CITED2Q99967 270 aaPredicted RBP6.07□□□□□ -1.44
USP4-207ENST00000462673 CHRDL1Q9BU40 450 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 PLEKHA3Q9HB20 300 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 ZNF331Q9NQX6 463 aaPredicted RBP6.07□□□□□ -1.44
USP4-207ENST00000462673 LINC00527Q9UJ94 153 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 LSM4Q9Y4Z0 139 aaKnown RBP6.07□□□□□ -1.44
USP4-207ENST00000462673 FBN1P35555 2871 aaKnown RBP6.06□□□□□ -1.44
USP4-207ENST00000462673 TRAV30A0A087WSZ9 112 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 TRAV34A0A0B4J273 112 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 TEX50A0A1B0GTY4 177 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 SMIM27A0A1W2PRY6 76 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 FAM223BA6NKX1 122 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 C15orf61A6NNL5 157 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 NPIPB5A8MRT5 1133 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 G3V318 75 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 BMPR1BO00238 502 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 HSBP1O75506 76 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 SCGB2A1O75556 95 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 PF4P02776 101 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 TRGV3P03979 118 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 CD28P10747 220 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 CD33P20138 364 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 NTF3P20783 257 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 ATP5IP56385 69 aaPredicted RBP6.06□□□□□ -1.44
USP4-207ENST00000462673 NSUN5P1Q3KNT7 163 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 TMEM95Q3KNT9 176 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 IBA57Q5T440 356 aaKnown RBP6.06□□□□□ -1.44
USP4-207ENST00000462673 PQLC2Q6ZP29 291 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 FAM223AQ8IWN6 122 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 C11orf44Q8N8P7 122 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 FAM110DQ8TAY7 271 aaPredicted RBP6.06□□□□□ -1.44
USP4-207ENST00000462673 TSKUQ8WUA8 353 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 IGF2BP2-AS1Q96M15 143 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 RCHY1Q96PM5 261 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 HINT2Q9BX68 163 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 MRPL32Q9BYC8 188 aaKnown RBP6.06□□□□□ -1.44
USP4-207ENST00000462673 NPVFQ9HCQ7 196 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 TMEM14BQ9NUH8 114 aa6.06□□□□□ -1.44
USP4-207ENST00000462673 TECRQ9NZ01 308 aaKnown RBP6.06□□□□□ -1.44
USP4-207ENST00000462673 A0A1W2PRE2 83 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 IGLC7A0M8Q6 106 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 HELTA6NFD8 242 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 M0R2Z0 102 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 CORTO00230 105 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 CCL25O15444 150 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 CRYGCP07315 174 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 LINC00869P0C866 280 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 EGR2P11161 476 aaPredicted RBP6.05□□□□□ -1.44
USP4-207ENST00000462673 MYCNOSP40205 109 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 HINT1P49773 126 aaPredicted RBP6.05□□□□□ -1.44
USP4-207ENST00000462673 CFHR3Q02985 330 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 ATP5G2Q06055 141 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 KLF5Q13887 457 aaPredicted RBP6.05□□□□□ -1.44
USP4-207ENST00000462673 MRPL54Q6P161 138 aaKnown RBP6.05□□□□□ -1.44
USP4-207ENST00000462673 PET117Q6UWS5 81 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 ATP5L2Q7Z4Y8 100 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 KLHL30-AS1Q8NEE0 82 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 C18orf32Q8TCD1 76 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 RNASE8Q8TDE3 154 aaKnown RBP6.05□□□□□ -1.44
USP4-207ENST00000462673 C4orf3Q8WVX3 66 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 MCRIP2Q9BUT9 160 aaKnown RBP6.05□□□□□ -1.44
USP4-207ENST00000462673 ST20Q9HBF5 79 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 TPSG1Q9NRR2 321 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 NDUFA4L2Q9NRX3 87 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 ATRQ13535 2644 aa6.05□□□□□ -1.44
USP4-207ENST00000462673 TRBV7-1A0A0A6YYK4 115 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 INS-IGF2F8WCM5 200 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 OR2J3O76001 311 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 TCL1AP56279 114 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 PRR20EP86478 221 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 PRR20CP86479 221 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 PRR20DP86480 221 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 PRR20BP86481 221 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 PRR20AP86496 221 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 PRCDQ00LT1 54 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 PRR31Q5SQ13 230 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 SPATA31B1PQ5VZV4 182 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 RNASEKQ6P5S7 137 aaKnown RBP6.04□□□□□ -1.44
USP4-207ENST00000462673 LCNL1Q6ZST4 164 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 FAM231DQ6ZW35 169 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 ZNF491Q8N8L2 437 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 EEF1AKMT3Q96AZ1 226 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 ATP6V0BQ99437 205 aa6.04□□□□□ -1.44
USP4-207ENST00000462673 A0A1W2PRX2 142 aa6.03□□□□□ -1.44
USP4-207ENST00000462673 HSBP1L1C9JCN9 74 aa6.03□□□□□ -1.44
USP4-207ENST00000462673 CCL24O00175 119 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms