RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 ZNF329Q86UD4 541 aa11.14□□□□□ -0.63
LIMD1-202ENST00000440097 MCRIP2Q9BUT9 160 aaKnown RBP11.14□□□□□ -0.63
LIMD1-202ENST00000440097 FLNBO75369 2602 aaKnown RBP11.14□□□□□ -0.63
LIMD1-202ENST00000440097 ITPR2Q14571 2701 aa11.14□□□□□ -0.63
LIMD1-202ENST00000440097 NPFFO15130 113 aa11.14□□□□□ -0.63
LIMD1-202ENST00000440097 LEPROTL1O95214 131 aa11.14□□□□□ -0.63
LIMD1-202ENST00000440097 NDPQ00604 133 aa11.14□□□□□ -0.63
LIMD1-202ENST00000440097 PVRIGQ6DKI7 326 aa11.14□□□□□ -0.63
LIMD1-202ENST00000440097 C12orf54Q6X4T0 127 aa11.14□□□□□ -0.63
LIMD1-202ENST00000440097 CSTL1Q9H114 145 aa11.14□□□□□ -0.63
LIMD1-202ENST00000440097 C1RLQ9NZP8 487 aa11.14□□□□□ -0.63
LIMD1-202ENST00000440097 IGLC1P0CG04 106 aa11.13□□□□□ -0.63
LIMD1-202ENST00000440097 HIST1H1EP10412 219 aaKnown RBP11.13□□□□□ -0.63
LIMD1-202ENST00000440097 SGK494Q96LW2 274 aa11.13□□□□□ -0.63
LIMD1-202ENST00000440097 SCRT2Q9NQ03 307 aa11.13□□□□□ -0.63
LIMD1-202ENST00000440097 A0A087X0K7 114 aa11.13□□□□□ -0.63
LIMD1-202ENST00000440097 HSBP1L1C9JCN9 74 aa11.13□□□□□ -0.63
LIMD1-202ENST00000440097 GNG5P63218 68 aa11.13□□□□□ -0.63
LIMD1-202ENST00000440097 ATP5L2Q7Z4Y8 100 aa11.13□□□□□ -0.63
LIMD1-202ENST00000440097 PIP4P2Q8N4L2 257 aa11.13□□□□□ -0.63
LIMD1-202ENST00000440097 TMUB1Q9BVT8 246 aa11.13□□□□□ -0.63
LIMD1-202ENST00000440097 ZNF469Q96JG9 3925 aaPredicted RBP11.12□□□□□ -0.63
LIMD1-202ENST00000440097 TRAV8-6A0A0B4J262 113 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 GAGE12BA1L429 117 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 H3BTX0 84 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 K7EIM0 57 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 GNG7O60262 68 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 BRD3OSQ6XYD6 125 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 C10orf105Q8TEF2 133 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 ZC2HC1AQ96GY0 325 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 CHRDL1Q9BU40 450 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 TMEM191AQ9H0A3 160 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 C7orf69Q9H7B7 122 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 RPH3ALQ9UNE2 315 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 SONP18583 2426 aaKnown RBP11.12□□□□□ -0.63
LIMD1-202ENST00000440097 IGHV4-30-2A0A087WSY4 118 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 TRAV40A0A0B4J280 105 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 CENPVL3A0A0U1RRI6 287 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 H0Y8G0 127 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 HBBP68871 147 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 FAM162BQ5T6X4 162 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 HIGD1AQ9Y241 93 aa11.12□□□□□ -0.63
LIMD1-202ENST00000440097 CD5LO43866 347 aa11.11□□□□□ -0.63
LIMD1-202ENST00000440097 IGHV3-23P01764 117 aa11.11□□□□□ -0.63
LIMD1-202ENST00000440097 ECSCRQ19T08 205 aa11.11□□□□□ -0.63
LIMD1-202ENST00000440097 STXBP6Q8NFX7 210 aa11.11□□□□□ -0.63
LIMD1-202ENST00000440097 ABCA2Q9BZC7 2435 aa11.11□□□□□ -0.63
LIMD1-202ENST00000440097 GOSR1O95249 250 aa11.11□□□□□ -0.63
LIMD1-202ENST00000440097 Q8N6K4 173 aa11.11□□□□□ -0.63
LIMD1-202ENST00000440097 CHCHD1Q96BP2 118 aaKnown RBP11.11□□□□□ -0.63
LIMD1-202ENST00000440097 K7ERU9 68 aa11.11□□□□□ -0.63
LIMD1-202ENST00000440097 FXYD5Q96DB9 178 aa11.11□□□□□ -0.63
LIMD1-202ENST00000440097 NDUFS8O00217 210 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 IGKV1-17P01599 117 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 FOXE3Q13461 319 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 EBI3Q14213 229 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 TMEM219Q86XT9 240 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 Q8N9W7 124 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 PMCHL2Q9BQD1 86 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 THYN1Q9P016 225 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 ACANP16112 2415 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 KMT2BQ9UMN6 2715 aaPredicted RBP11.1□□□□□ -0.63
LIMD1-202ENST00000440097 IGHV7-81A0A0B4J1V7 117 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 NBEAP1P0C6P0 100 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 COX6B1P14854 86 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 ZNF138P52744 262 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 HIST1H1AQ02539 215 aaPredicted RBP11.1□□□□□ -0.63
LIMD1-202ENST00000440097 PGLYRP4Q96LB8 373 aa11.1□□□□□ -0.63
LIMD1-202ENST00000440097 IL4P05112 153 aa11.09□□□□□ -0.63
LIMD1-202ENST00000440097 LINC00322Q6ZN03 302 aaPredicted RBP11.09□□□□□ -0.63
LIMD1-202ENST00000440097 MAP1LC3CQ9BXW4 147 aa11.09□□□□□ -0.63
LIMD1-202ENST00000440097 MEGF9Q9H1U4 602 aa11.09□□□□□ -0.63
LIMD1-202ENST00000440097 TIMM8BQ9Y5J9 83 aaPredicted RBP11.09□□□□□ -0.63
LIMD1-202ENST00000440097 NPIPB5A8MRT5 1133 aa11.09□□□□□ -0.63
LIMD1-202ENST00000440097 SAP30O75446 220 aa11.09□□□□□ -0.63
LIMD1-202ENST00000440097 HLA-DRB1P01911 266 aa11.09□□□□□ -0.63
LIMD1-202ENST00000440097 SLC25A5P05141 298 aaKnown RBP11.09□□□□□ -0.63
LIMD1-202ENST00000440097 MFAP4P55083 255 aa11.09□□□□□ -0.63
LIMD1-202ENST00000440097 GTSF1Q8WW33 167 aa11.09□□□□□ -0.63
LIMD1-202ENST00000440097 AJUBAQ96IF1 538 aa11.09□□□□□ -0.63
LIMD1-202ENST00000440097 FANCD2OSQ96PS1 177 aa11.09□□□□□ -0.63
LIMD1-202ENST00000440097 RPP21Q9H633 154 aaKnown RBP11.09□□□□□ -0.63
LIMD1-202ENST00000440097 PEF1Q9UBV8 284 aaKnown RBP11.09□□□□□ -0.63
LIMD1-202ENST00000440097 PGPA6NDG6 321 aa11.08□□□□□ -0.64
LIMD1-202ENST00000440097 GPR183P32249 361 aa11.08□□□□□ -0.64
LIMD1-202ENST00000440097 SLC25A39Q9BZJ4 359 aaPredicted RBP11.08□□□□□ -0.64
LIMD1-202ENST00000440097 APCP25054 2843 aa11.08□□□□□ -0.64
LIMD1-202ENST00000440097 IGLV11-55A0A075B6I3 123 aa11.08□□□□□ -0.64
LIMD1-202ENST00000440097 SNAI2O43623 268 aa11.08□□□□□ -0.64
LIMD1-202ENST00000440097 RIPPLY3P57055 190 aa11.08□□□□□ -0.64
LIMD1-202ENST00000440097 PAX8Q06710 450 aa11.08□□□□□ -0.64
LIMD1-202ENST00000440097 PET117Q6UWS5 81 aa11.08□□□□□ -0.64
LIMD1-202ENST00000440097 TTC9CQ8N5M4 171 aa11.08□□□□□ -0.64
LIMD1-202ENST00000440097 C21orf62Q9NYP8 219 aa11.08□□□□□ -0.64
LIMD1-202ENST00000440097 C7orf71A4D174 169 aa11.07□□□□□ -0.64
LIMD1-202ENST00000440097 MS4A6AQ9H2W1 248 aa11.07□□□□□ -0.64
LIMD1-202ENST00000440097 CUBNO60494 3623 aa11.07□□□□□ -0.64
LIMD1-202ENST00000440097 IGHV1-69DA0A0B4J2H0 117 aa11.07□□□□□ -0.64
LIMD1-202ENST00000440097 ATP6V0E1O15342 81 aa11.07□□□□□ -0.64
LIMD1-202ENST00000440097 IGHV1-69P01742 117 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 150 ms