RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 TMEM95Q3KNT9 176 aa12.55□□□□□ -0.4
PHRF1-203ENST00000416188 DKK1O94907 266 aa12.55□□□□□ -0.4
PHRF1-203ENST00000416188 PSG3Q16557 428 aa12.55□□□□□ -0.4
PHRF1-203ENST00000416188 RHPN1-AS1Q9BWJ2 59 aa12.55□□□□□ -0.4
PHRF1-203ENST00000416188 OVOL3O00110 214 aa12.54□□□□□ -0.4
PHRF1-203ENST00000416188 ATP6V0E1O15342 81 aa12.54□□□□□ -0.4
PHRF1-203ENST00000416188 PAX2Q02962 417 aa12.54□□□□□ -0.4
PHRF1-203ENST00000416188 MEGF9Q9H1U4 602 aa12.54□□□□□ -0.4
PHRF1-203ENST00000416188 DEFB112Q30KQ8 113 aa12.54□□□□□ -0.4
PHRF1-203ENST00000416188 TRGV1A0A0A0MS02 117 aa12.54□□□□□ -0.4
PHRF1-203ENST00000416188 MALRD1Q5VYJ5 2156 aa12.54□□□□□ -0.4
PHRF1-203ENST00000416188 LYL1P12980 280 aa12.54□□□□□ -0.4
PHRF1-203ENST00000416188 C14orf178Q8N769 122 aaPredicted RBP12.54□□□□□ -0.4
PHRF1-203ENST00000416188 MCRIP2Q9BUT9 160 aaKnown RBP12.54□□□□□ -0.4
PHRF1-203ENST00000416188 IGHV3-53P01767 116 aa12.53□□□□□ -0.4
PHRF1-203ENST00000416188 LINC00477Q96M19 166 aa12.53□□□□□ -0.4
PHRF1-203ENST00000416188 PGPEP1Q9NXJ5 209 aa12.53□□□□□ -0.4
PHRF1-203ENST00000416188 A0A087WX48 190 aa12.53□□□□□ -0.4
PHRF1-203ENST00000416188 TRAV8-2A0A0B4J237 113 aa12.53□□□□□ -0.4
PHRF1-203ENST00000416188 LINC01619G3V211 115 aa12.53□□□□□ -0.4
PHRF1-203ENST00000416188 MST1LQ2TV78 715 aa12.53□□□□□ -0.4
PHRF1-203ENST00000416188 TOMM40O96008 361 aa12.53□□□□□ -0.4
PHRF1-203ENST00000416188 CRPP02741 224 aa12.52□□□□□ -0.4
PHRF1-203ENST00000416188 ZNF562Q6V9R5 426 aa12.52□□□□□ -0.4
PHRF1-203ENST00000416188 C10orf105Q8TEF2 133 aa12.52□□□□□ -0.4
PHRF1-203ENST00000416188 LY96Q9Y6Y9 160 aa12.52□□□□□ -0.4
PHRF1-203ENST00000416188 ANKHD1Q8IWZ3 2542 aaKnown RBP12.52□□□□□ -0.4
PHRF1-203ENST00000416188 WDR86Q86TI4 376 aa12.52□□□□□ -0.41
PHRF1-203ENST00000416188 OR9G4Q8NGQ1 327 aa12.52□□□□□ -0.41
PHRF1-203ENST00000416188 C1orf147Q96MC9 270 aaPredicted RBP12.52□□□□□ -0.41
PHRF1-203ENST00000416188 FAM90A2PQ658T7 463 aa12.52□□□□□ -0.41
PHRF1-203ENST00000416188 UBE2E2Q96LR5 201 aa12.52□□□□□ -0.41
PHRF1-203ENST00000416188 SONP18583 2426 aaKnown RBP12.52□□□□□ -0.41
PHRF1-203ENST00000416188 RASL11AQ6T310 242 aa12.52□□□□□ -0.41
PHRF1-203ENST00000416188 LYPD1Q8N2G4 141 aa12.52□□□□□ -0.41
PHRF1-203ENST00000416188 OR5A1Q8NGJ0 315 aa12.52□□□□□ -0.41
PHRF1-203ENST00000416188 DPH3P1Q9H4G8 78 aa12.51□□□□□ -0.41
PHRF1-203ENST00000416188 SEM1Q6ZVN7 128 aa12.51□□□□□ -0.41
PHRF1-203ENST00000416188 SMPXQ9UHP9 88 aa12.51□□□□□ -0.41
PHRF1-203ENST00000416188 C22orf46C9J442 243 aa12.51□□□□□ -0.41
PHRF1-203ENST00000416188 SMKR1H3BMG3 65 aa12.51□□□□□ -0.41
PHRF1-203ENST00000416188 IGHV2-70P01814 119 aa12.51□□□□□ -0.41
PHRF1-203ENST00000416188 LMO1P25800 156 aa12.51□□□□□ -0.41
PHRF1-203ENST00000416188 LINC00158P58513 81 aa12.51□□□□□ -0.41
PHRF1-203ENST00000416188 OR2K2Q8NGT1 345 aa12.51□□□□□ -0.41
PHRF1-203ENST00000416188 TMEM190Q8WZ59 177 aa12.51□□□□□ -0.41
PHRF1-203ENST00000416188 ZNF479Q96JC4 524 aa12.51□□□□□ -0.41
PHRF1-203ENST00000416188 NAA38Q9BRA0 125 aaKnown RBP12.51□□□□□ -0.41
PHRF1-203ENST00000416188 RPL36AP83881 106 aaKnown RBP12.5□□□□□ -0.41
PHRF1-203ENST00000416188 AMN1Q8IY45 258 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 RPL36ALQ969Q0 106 aaKnown RBP12.5□□□□□ -0.41
PHRF1-203ENST00000416188 DOCK11Q5JSL3 2073 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 SLC25A20O43772 301 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 IGHV4-59P01825 116 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 HSD52Q0P140 79 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 C1QTNF4Q9BXJ3 329 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 DAZ1Q9NQZ3 744 aaKnown RBP12.5□□□□□ -0.41
PHRF1-203ENST00000416188 hDV102S1A0JD36 115 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 G3V318 75 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 WISP2O76076 250 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 C3orf79P0CE67 100 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 ERCC8Q13216 396 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 PRADC1Q9BSG0 188 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 MS4A6AQ9H2W1 248 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 KAAG1Q9UBP8 84 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 ITGB1BP1O14713 200 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 CFPP27918 469 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 VPREB3Q9UKI3 123 aa12.5□□□□□ -0.41
PHRF1-203ENST00000416188 LSM4Q9Y4Z0 139 aaKnown RBP12.5□□□□□ -0.41
PHRF1-203ENST00000416188 LINC01549A6NIU2 74 aa12.49□□□□□ -0.41
PHRF1-203ENST00000416188 SHANK2-AS3Q9BTD1 123 aa12.49□□□□□ -0.41
PHRF1-203ENST00000416188 NPC2P61916 151 aa12.49□□□□□ -0.41
PHRF1-203ENST00000416188 FAM120AOSQ5T036 256 aa12.49□□□□□ -0.41
PHRF1-203ENST00000416188 C1orf194Q5T5A4 169 aa12.49□□□□□ -0.41
PHRF1-203ENST00000416188 C11orf68Q9H3H3 251 aaKnown RBP12.49□□□□□ -0.41
PHRF1-203ENST00000416188 GUSBP1Q15486 140 aa12.49□□□□□ -0.41
PHRF1-203ENST00000416188 ZNF664Q8N3J9 261 aa12.49□□□□□ -0.41
PHRF1-203ENST00000416188 SLC25A2Q9BXI2 301 aa12.49□□□□□ -0.41
PHRF1-203ENST00000416188 FNDC10F2Z333 226 aa12.49□□□□□ -0.41
PHRF1-203ENST00000416188 Q86TA4 180 aa12.49□□□□□ -0.41
PHRF1-203ENST00000416188 MYLKQ15746 1914 aa12.49□□□□□ -0.41
PHRF1-203ENST00000416188 A0A087WWL8 130 aa12.48□□□□□ -0.41
PHRF1-203ENST00000416188 TMEM86BQ8N661 226 aa12.48□□□□□ -0.41
PHRF1-203ENST00000416188 CSTL1Q9H114 145 aa12.48□□□□□ -0.41
PHRF1-203ENST00000416188 VCYO14598 125 aa12.48□□□□□ -0.41
PHRF1-203ENST00000416188 FBXL19-AS1Q494R0 122 aa12.48□□□□□ -0.41
PHRF1-203ENST00000416188 DTX2Q86UW9 622 aa12.48□□□□□ -0.41
PHRF1-203ENST00000416188 PLCE1Q9P212 2302 aa12.48□□□□□ -0.41
PHRF1-203ENST00000416188 SEC11AP67812 179 aa12.48□□□□□ -0.41
PHRF1-203ENST00000416188 MORN3Q6PF18 240 aaPredicted RBP12.48□□□□□ -0.41
PHRF1-203ENST00000416188 TMEM158Q8WZ71 300 aa12.48□□□□□ -0.41
PHRF1-203ENST00000416188 LIME1Q9H400 295 aa12.48□□□□□ -0.41
PHRF1-203ENST00000416188 MTURNQ8N3F0 131 aa12.47□□□□□ -0.41
PHRF1-203ENST00000416188 RNF138Q8WVD3 245 aa12.47□□□□□ -0.41
PHRF1-203ENST00000416188 TMEM14BQ9NUH8 114 aa12.47□□□□□ -0.41
PHRF1-203ENST00000416188 C1orf159Q96HA4 380 aa12.47□□□□□ -0.41
PHRF1-203ENST00000416188 DLEU1O43261 78 aa12.47□□□□□ -0.41
PHRF1-203ENST00000416188 NDUFB8O95169 186 aa12.47□□□□□ -0.41
PHRF1-203ENST00000416188 BCL6BQ8N143 479 aaPredicted RBP12.47□□□□□ -0.41
PHRF1-203ENST00000416188 MED13Q9UHV7 2174 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 156 ms