RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 C1orf229Q6ZS94 237 aaPredicted RBP9.64□□□□□ -0.87
HMGB1-206ENST00000405805 OSR1Q8TAX0 266 aaPredicted RBP9.64□□□□□ -0.87
HMGB1-206ENST00000405805 SLC25A15Q9Y619 301 aa9.64□□□□□ -0.87
HMGB1-206ENST00000405805 BOD1L1Q8NFC6 3051 aa9.64□□□□□ -0.87
HMGB1-206ENST00000405805 LY6HO94772 140 aa9.64□□□□□ -0.87
HMGB1-206ENST00000405805 IGFL4Q6B9Z1 124 aa9.64□□□□□ -0.87
HMGB1-206ENST00000405805 LINC00173Q6ZV60 143 aa9.64□□□□□ -0.87
HMGB1-206ENST00000405805 RPP21Q9H633 154 aaKnown RBP9.64□□□□□ -0.87
HMGB1-206ENST00000405805 ID1P41134 155 aa9.64□□□□□ -0.87
HMGB1-206ENST00000405805 TIMD4Q96H15 378 aa9.64□□□□□ -0.87
HMGB1-206ENST00000405805 F2RL2O00254 374 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 SMAD7O15105 426 aaKnown RBP9.63□□□□□ -0.87
HMGB1-206ENST00000405805 CNTFRP26992 372 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 LGALS7P47929 136 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 MFAP4P55083 255 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 IFI27L1Q96BM0 104 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 MRPL32Q9BYC8 188 aaKnown RBP9.63□□□□□ -0.87
HMGB1-206ENST00000405805 TMEM14BQ9NUH8 114 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 RNF114Q9Y508 228 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 COL4A2P08572 1712 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 TRAV8-4A0A0B4J246 113 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 RASL11AQ6T310 242 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 SPACA3Q8IXA5 215 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 C20orf78Q9BR46 151 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 NDFIP1Q9BT67 221 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 TMEM200BQ69YZ2 307 aa9.63□□□□□ -0.87
HMGB1-206ENST00000405805 CITED2Q99967 270 aaPredicted RBP9.63□□□□□ -0.87
HMGB1-206ENST00000405805 SORL1Q92673 2214 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 TRAV12-3A0A0B4J271 114 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 TCRBV4S1A1TA0A5B7 111 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 WT1-ASQ06250 92 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 C8orf86Q6ZUL3 223 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 LINC01560Q8TB33 94 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 KLF12Q9Y4X4 402 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 ARHGAP32A7KAX9 2087 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 E7EUB6 86 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 IFITM1P13164 125 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 RPS20P60866 119 aaKnown RBP9.62□□□□□ -0.87
HMGB1-206ENST00000405805 GAFA1Q96PS6 74 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 CFHR2P36980 270 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 DEFB104AQ8WTQ1 72 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 ABHD17AQ96GS6 310 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 CHAC1Q9BUX1 264 aa9.62□□□□□ -0.87
HMGB1-206ENST00000405805 SETD2Q9BYW2 2564 aaPredicted RBP9.61□□□□□ -0.87
HMGB1-206ENST00000405805 F5H697 171 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 CACNG8Q8WXS5 425 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 DLX4Q92988 240 aaPredicted RBP9.61□□□□□ -0.87
HMGB1-206ENST00000405805 MRPL27Q9P0M9 148 aaKnown RBP9.61□□□□□ -0.87
HMGB1-206ENST00000405805 A0A1B0GUT8 65 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 C1orf162Q8NEQ5 155 aaPredicted RBP9.61□□□□□ -0.87
HMGB1-206ENST00000405805 TP53TG3Q9ULZ0 132 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 C17orf100A8MU93 164 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 F8W1H4 67 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 COX6CP09669 75 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 PRR20EP86478 221 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 PRR20CP86479 221 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 PRR20DP86480 221 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 PRR20BP86481 221 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 PRR20AP86496 221 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 ECSCRQ19T08 205 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 ZNF562Q6V9R5 426 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 GLMPQ8WWB7 406 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 LINC00312Q9Y6C7 94 aa9.61□□□□□ -0.87
HMGB1-206ENST00000405805 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.6□□□□□ -0.87
HMGB1-206ENST00000405805 H0YJW9 148 aa9.6□□□□□ -0.87
HMGB1-206ENST00000405805 COX8AP10176 69 aa9.6□□□□□ -0.87
HMGB1-206ENST00000405805 JMJD8Q96S16 334 aa9.6□□□□□ -0.87
HMGB1-206ENST00000405805 A0A1W2PPI3 338 aa9.6□□□□□ -0.87
HMGB1-206ENST00000405805 ZNF56Q15929 161 aa9.6□□□□□ -0.87
HMGB1-206ENST00000405805 ZC2HC1BQ5TFG8 222 aa9.6□□□□□ -0.87
HMGB1-206ENST00000405805 RBPMS2Q6ZRY4 209 aaKnown RBP9.6□□□□□ -0.87
HMGB1-206ENST00000405805 SCNM1Q9BWG6 230 aa9.6□□□□□ -0.87
HMGB1-206ENST00000405805 KMT2EQ8IZD2 1858 aa9.6□□□□□ -0.87
HMGB1-206ENST00000405805 NCKAP5O14513 1909 aa9.6□□□□□ -0.87
HMGB1-206ENST00000405805 C9JAW5 83 aa9.6□□□□□ -0.87
HMGB1-206ENST00000405805 K7EM74 188 aa9.6□□□□□ -0.87
HMGB1-206ENST00000405805 NCR2O95944 276 aa9.6□□□□□ -0.87
HMGB1-206ENST00000405805 ZNF329Q86UD4 541 aa9.59□□□□□ -0.87
HMGB1-206ENST00000405805 DMDP11532 3685 aa9.59□□□□□ -0.87
HMGB1-206ENST00000405805 P0C879 139 aa9.59□□□□□ -0.87
HMGB1-206ENST00000405805 CHCHD1Q96BP2 118 aaKnown RBP9.59□□□□□ -0.87
HMGB1-206ENST00000405805 SLC25A2Q9BXI2 301 aa9.59□□□□□ -0.87
HMGB1-206ENST00000405805 MRPL36Q9P0J6 103 aaKnown RBP9.59□□□□□ -0.87
HMGB1-206ENST00000405805 SMKR1H3BMG3 65 aa9.59□□□□□ -0.87
HMGB1-206ENST00000405805 SLC25A48Q6ZT89 311 aaKnown RBP9.59□□□□□ -0.87
HMGB1-206ENST00000405805 PCP2Q8IVA1 136 aa9.59□□□□□ -0.87
HMGB1-206ENST00000405805 RAXQ9Y2V3 346 aa9.59□□□□□ -0.87
HMGB1-206ENST00000405805 MYO9AB2RTY4 2548 aa9.59□□□□□ -0.87
HMGB1-206ENST00000405805 FAM90A9PA6NNJ1 464 aa9.58□□□□□ -0.88
HMGB1-206ENST00000405805 TNRC18O15417 2968 aaPredicted RBP9.58□□□□□ -0.88
HMGB1-206ENST00000405805 CD3EP07766 207 aa9.58□□□□□ -0.88
HMGB1-206ENST00000405805 LEPP41159 167 aa9.58□□□□□ -0.88
HMGB1-206ENST00000405805 TNFRSF6BO95407 300 aa9.58□□□□□ -0.88
HMGB1-206ENST00000405805 IGHG3P01860 377 aa9.58□□□□□ -0.88
HMGB1-206ENST00000405805 MT-ATP8P03928 68 aa9.58□□□□□ -0.88
HMGB1-206ENST00000405805 TTTY13Q9BZ97 58 aa9.58□□□□□ -0.88
HMGB1-206ENST00000405805 EXPH5Q8NEV8 1989 aa9.58□□□□□ -0.88
HMGB1-206ENST00000405805 HBDP02042 147 aa9.58□□□□□ -0.88
HMGB1-206ENST00000405805 MGPP08493 103 aa9.58□□□□□ -0.88
HMGB1-206ENST00000405805 RAX2Q96IS3 184 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms