RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 OR11H6Q8NGC7 330 aa8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 BAALCQ8WXS3 180 aa8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 RPL36ALQ969Q0 106 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 BUB1B-PAK6H3BSN5 160 aa8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 C20orf204Q6ZNR8 217 aa8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 MDS2Q8NDY4 140 aa8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 Q8NFD4 153 aa8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 CARD19Q96LW7 228 aa8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 CD59P13987 128 aa8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 MORN5Q5VZ52 161 aa8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 DTX2Q86UW9 622 aa8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 PI4KAP42356 2102 aa8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 EFNA4P52798 201 aa8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 SHANK2-AS3Q9BTD1 123 aa8.32□□□□□ -1.08
LIMCH1-203ENST00000396595 ACACAQ13085 2346 aa8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 Q0VFX4 171 aa8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 STPG4Q8N801 248 aa8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 TRAV12-1A0A0B4J245 112 aa8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 CCL25O15444 150 aa8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 WFDC9Q8NEX5 89 aa8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 C18orf32Q8TCD1 76 aa8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 LIME1Q9H400 295 aa8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 HEATR1Q9H583 2144 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 IGHV1-24A0A0C4DH33 117 aa8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 IGKV1-6A0A0C4DH72 117 aa8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 ACYP1P07311 99 aa8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 LINC00205P59089 165 aa8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 KLRD1Q13241 179 aa8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 C14orf178Q8N769 122 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-203ENST00000396595 MBD3L4A6NDZ8 208 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 MBD3L3A6NE82 208 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 MBD3L5A6NJ08 208 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 FGF6P10767 208 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 MBD3L2Q8NHZ7 208 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 USMG5Q96IX5 58 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 CADP27708 2225 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 A0A0U1RQV1 116 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 MMP23AO75900 390 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 IGHG2P01859 326 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 ZNF474Q6S9Z5 364 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 MCRIP2Q9BUT9 160 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 IGHG3P01860 377 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 DSCR9P59020 149 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 HAPLN4Q86UW8 402 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 TIMM21Q9BVV7 248 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 SMKR1H3BMG3 65 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 ARMS2P0C7Q2 107 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 DTX1Q86Y01 620 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 CEND1Q8N111 149 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 RNASE8Q8TDE3 154 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 LINC00479Q96M42 142 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 MLANAQ16655 118 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 C10orf91Q5T1B1 145 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 SPTSSBQ8NFR3 76 aa8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 PHF3Q92576 2039 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-203ENST00000396595 BRWD3Q6RI45 1802 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 COX8AP10176 69 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 TMEM219Q86XT9 240 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 ANK1P16157 1881 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 IGKV1-16P04430 117 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 NBL1P41271 181 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 NTN5Q8WTR8 489 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 C1orf147Q96MC9 270 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 FER1L5A0AVI2 2057 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 SRSF2Q01130 221 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 VGLL1Q99990 258 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 CACNA1GO43497 2377 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 A0A087WX48 190 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 FAM223BA6NKX1 122 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 E9PQ18 207 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 ETV2O00321 342 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 LMO1P25800 156 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 PAX9P55771 341 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 FAM223AQ8IWN6 122 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 TMEM75Q8N9X5 138 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 TMEM14BQ9NUH8 114 aa8.29□□□□□ -1.08
LIMCH1-203ENST00000396595 YPEL3P61236 119 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 LY6G5BQ8NDX9 201 aa8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 IGHV2-70DA0A0C4DH43 119 aa8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 A0A1B0GX51 115 aa8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 EGR2P11161 476 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 NDPQ00604 133 aa8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 FANCMQ8IYD8 2048 aa8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 RS1O15537 224 aa8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 FAM236AA0A1B0GUQ0 79 aa8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 FAM236BA0A1B0GV22 79 aa8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 IGHV2-5P01817 119 aa8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 TAL2Q16559 108 aa8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 SPACA3Q8IXA5 215 aa8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 C8orf86Q6ZUL3 223 aa8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 MYO7BQ6PIF6 2116 aa8.28□□□□□ -1.08
LIMCH1-203ENST00000396595 DAD1P61803 113 aa8.27□□□□□ -1.08
LIMCH1-203ENST00000396595 FAM231DQ6ZW35 169 aa8.27□□□□□ -1.08
LIMCH1-203ENST00000396595 DOCK10Q96BY6 2186 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 NCOR1O75376 2440 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 H3BUX3 64 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 FAM104BQ5XKR9 115 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 PRSS57Q6UWY2 283 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 HS3ST6Q96QI5 342 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 SPANXB1Q9NS25 103 aaPredicted RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 129.8 ms