RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 ZNF414Q96IQ9 312 aa16.19■□□□□ 0.18
CLK3-202ENST00000395066 IGFL4Q6B9Z1 124 aa16.18■□□□□ 0.18
CLK3-202ENST00000395066 GATD1Q8NB37 220 aa16.18■□□□□ 0.18
CLK3-202ENST00000395066 MRPS12O15235 138 aaKnown RBP16.18■□□□□ 0.18
CLK3-202ENST00000395066 GNG7O60262 68 aa16.18■□□□□ 0.18
CLK3-202ENST00000395066 TMEM75Q8N9X5 138 aa16.18■□□□□ 0.18
CLK3-202ENST00000395066 CFHR4Q92496 578 aa16.18■□□□□ 0.18
CLK3-202ENST00000395066 IGHV3-35A0A0C4DH35 117 aa16.17■□□□□ 0.18
CLK3-202ENST00000395066 NDPQ00604 133 aa16.17■□□□□ 0.18
CLK3-202ENST00000395066 GAGE12BA1L429 117 aa16.17■□□□□ 0.18
CLK3-202ENST00000395066 DPM3Q9P2X0 92 aa16.17■□□□□ 0.18
CLK3-202ENST00000395066 A0A1B0GW15 77 aa16.16■□□□□ 0.18
CLK3-202ENST00000395066 C7orf71A4D174 169 aa16.16■□□□□ 0.18
CLK3-202ENST00000395066 FXYD7P58549 80 aa16.16■□□□□ 0.18
CLK3-202ENST00000395066 VKORC1Q9BQB6 163 aa16.16■□□□□ 0.18
CLK3-202ENST00000395066 IGKV2-40A0A087WW87 121 aaPredicted RBP16.16■□□□□ 0.18
CLK3-202ENST00000395066 LOC389332A0A1B0GUA5 103 aa16.16■□□□□ 0.18
CLK3-202ENST00000395066 TMEM213A2RRL7 107 aa16.16■□□□□ 0.18
CLK3-202ENST00000395066 IGKV2D-40P01614 121 aaPredicted RBP16.16■□□□□ 0.18
CLK3-202ENST00000395066 LOXL1Q08397 574 aaPredicted RBP16.16■□□□□ 0.18
CLK3-202ENST00000395066 DYNAPQ8N1N2 210 aa16.16■□□□□ 0.18
CLK3-202ENST00000395066 FANCD2OSQ96PS1 177 aa16.16■□□□□ 0.18
CLK3-202ENST00000395066 SERTM2A0A1B0GWG4 89 aa16.15■□□□□ 0.18
CLK3-202ENST00000395066 TMEM97Q5BJF2 176 aa16.15■□□□□ 0.18
CLK3-202ENST00000395066 NCBP2LA6PVI3 153 aaKnown RBP16.15■□□□□ 0.18
CLK3-202ENST00000395066 SEC11AP67812 179 aa16.15■□□□□ 0.18
CLK3-202ENST00000395066 F8W735 103 aaPredicted RBP16.15■□□□□ 0.18
CLK3-202ENST00000395066 COL6A6A6NMZ7 2263 aa16.15■□□□□ 0.18
CLK3-202ENST00000395066 IFI27P40305 119 aaPredicted RBP16.14■□□□□ 0.17
CLK3-202ENST00000395066 OR8A1Q8NGG7 326 aa16.14■□□□□ 0.17
CLK3-202ENST00000395066 Q8TAT8 98 aa16.14■□□□□ 0.17
CLK3-202ENST00000395066 AKAP6Q13023 2319 aa16.14■□□□□ 0.17
CLK3-202ENST00000395066 WI2-2373I1.2A0A1W2PRP0 233 aa16.14■□□□□ 0.17
CLK3-202ENST00000395066 K7EQM0 130 aa16.14■□□□□ 0.17
CLK3-202ENST00000395066 TCTAP57738 103 aa16.14■□□□□ 0.17
CLK3-202ENST00000395066 SMIM15Q7Z3B0 74 aa16.14■□□□□ 0.17
CLK3-202ENST00000395066 LY6G5BQ8NDX9 201 aa16.14■□□□□ 0.17
CLK3-202ENST00000395066 SPTBN1Q01082 2364 aaKnown RBP16.13■□□□□ 0.17
CLK3-202ENST00000395066 A0A096LNJ9 63 aa16.13■□□□□ 0.17
CLK3-202ENST00000395066 FGF6P10767 208 aa16.13■□□□□ 0.17
CLK3-202ENST00000395066 HLA-DMBP28068 263 aa16.13■□□□□ 0.17
CLK3-202ENST00000395066 Q6AWC8 147 aa16.13■□□□□ 0.17
CLK3-202ENST00000395066 LYZL1Q6UWQ5 148 aa16.13■□□□□ 0.17
CLK3-202ENST00000395066 RNF5Q99942 180 aa16.13■□□□□ 0.17
CLK3-202ENST00000395066 C5orf64Q2M2E5 130 aa16.13■□□□□ 0.17
CLK3-202ENST00000395066 DPF1Q92782 380 aa16.13■□□□□ 0.17
CLK3-202ENST00000395066 D6R8Y8 96 aa16.12■□□□□ 0.17
CLK3-202ENST00000395066 AMN1Q8IY45 258 aa16.12■□□□□ 0.17
CLK3-202ENST00000395066 TMEM190Q8WZ59 177 aa16.12■□□□□ 0.17
CLK3-202ENST00000395066 K7ERU9 68 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 UQCRFS1P47985 274 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 ZNF493Q6ZR52 646 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 PIP4P2Q8N4L2 257 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 SIGLEC8Q9NYZ4 499 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 IGLV11-55A0A075B6I3 123 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 CCL21O00585 134 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 SH2D1AO60880 128 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 NDUFA3O95167 84 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 CT45A10P0DMU9 189 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 NHLH1Q02575 133 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 OR11H6Q8NGC7 330 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 AAMDCQ9H7C9 122 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 RABAC1Q9UI14 185 aa16.11■□□□□ 0.17
CLK3-202ENST00000395066 GAGE10A6NGK3 116 aa16.1■□□□□ 0.17
CLK3-202ENST00000395066 LYPD1Q8N2G4 141 aa16.1■□□□□ 0.17
CLK3-202ENST00000395066 SMKR1H3BMG3 65 aa16.1■□□□□ 0.17
CLK3-202ENST00000395066 NPBQ8NG41 125 aa16.1■□□□□ 0.17
CLK3-202ENST00000395066 ARPC1AQ92747 370 aa16.1■□□□□ 0.17
CLK3-202ENST00000395066 SRSF8Q9BRL6 282 aaKnown RBP16.1■□□□□ 0.17
CLK3-202ENST00000395066 K7ENP7 123 aa16.09■□□□□ 0.17
CLK3-202ENST00000395066 MFAP4P55083 255 aa16.09■□□□□ 0.17
CLK3-202ENST00000395066 OR1N2Q8NGR9 330 aa16.09■□□□□ 0.17
CLK3-202ENST00000395066 LGALS9BQ3B8N2 356 aa16.09■□□□□ 0.17
CLK3-202ENST00000395066 LGALS9CQ6DKI2 356 aa16.09■□□□□ 0.17
CLK3-202ENST00000395066 TMEM189A5PLL7 270 aa16.08■□□□□ 0.17
CLK3-202ENST00000395066 ZNF80P51504 273 aaPredicted RBP16.08■□□□□ 0.17
CLK3-202ENST00000395066 PRELID3AQ96N28 172 aa16.08■□□□□ 0.17
CLK3-202ENST00000395066 VGLL1Q99990 258 aa16.08■□□□□ 0.17
CLK3-202ENST00000395066 C21orf62Q9NYP8 219 aa16.08■□□□□ 0.17
CLK3-202ENST00000395066 AP1S3Q96PC3 154 aa16.08■□□□□ 0.16
CLK3-202ENST00000395066 U3KQK5 164 aa16.08■□□□□ 0.16
CLK3-202ENST00000395066 CELSR1Q9NYQ6 3014 aa16.07■□□□□ 0.16
CLK3-202ENST00000395066 A6NDN8 102 aa16.07■□□□□ 0.16
CLK3-202ENST00000395066 CACNG7P62955 275 aa16.07■□□□□ 0.16
CLK3-202ENST00000395066 BOD1L2Q8IYS8 172 aa16.07■□□□□ 0.16
CLK3-202ENST00000395066 RAB1BQ9H0U4 201 aa16.07■□□□□ 0.16
CLK3-202ENST00000395066 C9orf118A6NHY6 69 aa16.07■□□□□ 0.16
CLK3-202ENST00000395066 NPIPB5A8MRT5 1133 aa16.07■□□□□ 0.16
CLK3-202ENST00000395066 ODF3BA8MYP8 253 aa16.07■□□□□ 0.16
CLK3-202ENST00000395066 H3BRM9 83 aa16.07■□□□□ 0.16
CLK3-202ENST00000395066 CEACAM3P40198 252 aa16.07■□□□□ 0.16
CLK3-202ENST00000395066 FAM104BQ5XKR9 115 aa16.07■□□□□ 0.16
CLK3-202ENST00000395066 UFSP1Q6NVU6 142 aa16.07■□□□□ 0.16
CLK3-202ENST00000395066 EGR2P11161 476 aaPredicted RBP16.06■□□□□ 0.16
CLK3-202ENST00000395066 GTF2H5Q6ZYL4 71 aa16.06■□□□□ 0.16
CLK3-202ENST00000395066 VMO1Q7Z5L0 202 aa16.06■□□□□ 0.16
CLK3-202ENST00000395066 ORMDL3Q8N138 153 aa16.06■□□□□ 0.16
CLK3-202ENST00000395066 SMAD5-AS1Q9Y6J3 95 aa16.06■□□□□ 0.16
CLK3-202ENST00000395066 VPS13CQ709C8 3753 aa16.05■□□□□ 0.16
CLK3-202ENST00000395066 SMAD7O15105 426 aaKnown RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms