RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PFN1P07737 140 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 CFHR3Q02985 330 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 C9orf153Q5TBE3 101 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 XCL2Q9UBD3 114 aa10.34□□□□□ -0.75
CCDC88C-204ENST00000389857 IGHG3P01860 377 aa10.34□□□□□ -0.75
CCDC88C-204ENST00000389857 Q8N8P6 123 aa10.34□□□□□ -0.75
CCDC88C-204ENST00000389857 TCF15Q12870 199 aa10.34□□□□□ -0.75
CCDC88C-204ENST00000389857 UTF1Q5T230 341 aa10.34□□□□□ -0.75
CCDC88C-204ENST00000389857 GAGE12BA1L429 117 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 RNF223E7ERA6 249 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 LHBP01229 141 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 GAS1P54826 345 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 YPEL3P61236 119 aaPredicted RBP10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 TRAV25A0A0B4J276 109 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 RUSC1-AS1Q66K80 236 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 C8orf49Q96NF6 230 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 HS3ST6Q96QI5 342 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 PFN2P35080 140 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 SPINK13Q1W4C9 94 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 SP5Q6BEB4 398 aaPredicted RBP10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 PKIGQ9Y2B9 76 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 FAM231BA6NCW3 169 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 ATP6V0E1O15342 81 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 CGB7P0DN87 165 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 LYL1P12980 280 aa10.33□□□□□ -0.76
CCDC88C-204ENST00000389857 VWC2Q2TAL6 325 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 SIPA1L1O43166 1804 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 E7EQL1 145 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 ZSWIM8A7E2V4 1837 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 MST1P26927 711 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 SRSF2Q01130 221 aaKnown RBP10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 IGHV1OR15-1A0A075B7D0 117 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 IGHV1-69DA0A0B4J2H0 117 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 C22orf46C9J442 243 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 IGHV1-69P01742 117 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 IGHV3-16A0A0C4DH30 117 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 CLPSP04118 112 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 KLF5Q13887 457 aaPredicted RBP10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 MYO7BQ6PIF6 2116 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 A0A1W2PPI3 338 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 GATA4P43694 442 aa10.32□□□□□ -0.76
CCDC88C-204ENST00000389857 TRAV13-2A0A0B4J235 113 aa10.31□□□□□ -0.76
CCDC88C-204ENST00000389857 SCRT2Q9NQ03 307 aa10.31□□□□□ -0.76
CCDC88C-204ENST00000389857 OR11H6Q8NGC7 330 aa10.31□□□□□ -0.76
CCDC88C-204ENST00000389857 KLK9Q9UKQ9 250 aa10.31□□□□□ -0.76
CCDC88C-204ENST00000389857 J3QLI3 93 aa10.31□□□□□ -0.76
CCDC88C-204ENST00000389857 MST1LQ2TV78 715 aa10.31□□□□□ -0.76
CCDC88C-204ENST00000389857 ZMAT4Q9H898 229 aa10.31□□□□□ -0.76
CCDC88C-204ENST00000389857 Q6ZS92 163 aa10.31□□□□□ -0.76
CCDC88C-204ENST00000389857 IGKV1-16P04430 117 aa10.31□□□□□ -0.76
CCDC88C-204ENST00000389857 TCTEX1D4Q5JR98 221 aa10.31□□□□□ -0.76
CCDC88C-204ENST00000389857 PI4KAP42356 2102 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 KIAA2026Q5HYC2 2103 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 QRFPP83859 136 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 Q0VG73 95 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 TAL2Q16559 108 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 C2orf66Q6UXQ4 117 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 Q96MF0 132 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 KNCNA6PVL3 124 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 TMEM14BQ9NUH8 114 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 DOCK11Q5JSL3 2073 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 NDUFA4O00483 81 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 CRLF1O75462 422 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 CDKN1BP46527 198 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 CFHR2P36980 270 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 B3GALT5-AS1P59052 145 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 GAGE6Q13070 117 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 FAM104BQ5XKR9 115 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 STPG4Q8N801 248 aa10.3□□□□□ -0.76
CCDC88C-204ENST00000389857 IGHV2-70DA0A0C4DH43 119 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 MESP1Q9BRJ9 268 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 GAGE7O76087 117 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 GAGE12FP0CL80 117 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 GAGE12GP0CL81 117 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 GAGE12IP0CL82 117 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 C17orf82Q86X59 251 aaPredicted RBP10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 PAX9P55771 341 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 AKAP6Q13023 2319 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 PHF3Q92576 2039 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 ZNF833PQ6ZTB9 187 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 C8orf86Q6ZUL3 223 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 TMEM213A2RRL7 107 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 HLA-DRB4P13762 266 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 HERVK_113P63121 156 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 HLA-DRB4X5D2U9 266 aa10.29□□□□□ -0.76
CCDC88C-204ENST00000389857 ZNRF2Q8NHG8 242 aa10.28□□□□□ -0.76
CCDC88C-204ENST00000389857 HAMPP81172 84 aa10.28□□□□□ -0.76
CCDC88C-204ENST00000389857 FOXL2NBQ6ZUU3 175 aa10.28□□□□□ -0.76
CCDC88C-204ENST00000389857 MRAPQ8TCY5 172 aa10.28□□□□□ -0.76
CCDC88C-204ENST00000389857 NDUFA4L2Q9NRX3 87 aa10.28□□□□□ -0.76
CCDC88C-204ENST00000389857 SLAQ13239 276 aa10.28□□□□□ -0.76
CCDC88C-204ENST00000389857 Q8TCH9 128 aa10.28□□□□□ -0.76
CCDC88C-204ENST00000389857 TRACP01848 142 aa10.28□□□□□ -0.76
CCDC88C-204ENST00000389857 IGHG4P01861 327 aa10.28□□□□□ -0.76
CCDC88C-204ENST00000389857 CFPP27918 469 aa10.28□□□□□ -0.76
CCDC88C-204ENST00000389857 ZNF134P52741 427 aa10.28□□□□□ -0.76
CCDC88C-204ENST00000389857 PRSS29PA6NIE9 313 aa10.27□□□□□ -0.76
CCDC88C-204ENST00000389857 NDUFS5O43920 106 aa10.27□□□□□ -0.76
CCDC88C-204ENST00000389857 LY6HO94772 140 aa10.27□□□□□ -0.76
CCDC88C-204ENST00000389857 PPDPFLQ8WWR9 84 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms