RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 GZMBP10144 247 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 PDE6HQ13956 83 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 IQCJQ1A5X6 159 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 OR10J3Q5JRS4 329 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 C1orf194Q5T5A4 169 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 TMEM136Q6ZRR5 245 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 ATP5L2Q7Z4Y8 100 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 CMTM2Q8TAZ6 248 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 MLST8Q9BVC4 326 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 ZNF331Q9NQX6 463 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 NAT8BQ9UHF3 227 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 TLN2Q9Y4G6 2542 aa14.03□□□□□ -0.16
CCDC88C-203ENST00000389856 LTAP01374 205 aa14.03□□□□□ -0.16
CCDC88C-203ENST00000389856 IGHV3-11P01762 117 aa14.03□□□□□ -0.16
CCDC88C-203ENST00000389856 RNASE1P07998 156 aaKnown RBP14.03□□□□□ -0.16
CCDC88C-203ENST00000389856 RNF152Q8N8N0 203 aa14.03□□□□□ -0.16
CCDC88C-203ENST00000389856 NUDT10Q8NFP7 164 aa14.03□□□□□ -0.16
CCDC88C-203ENST00000389856 TSKUQ8WUA8 353 aa14.03□□□□□ -0.16
CCDC88C-203ENST00000389856 NUDT11Q96G61 164 aa14.03□□□□□ -0.16
CCDC88C-203ENST00000389856 FAM181BA6NEQ2 426 aa14.02□□□□□ -0.16
CCDC88C-203ENST00000389856 LINC00479Q96M42 142 aa14.02□□□□□ -0.16
CCDC88C-203ENST00000389856 IGHV3-35A0A0C4DH35 117 aa14.01□□□□□ -0.17
CCDC88C-203ENST00000389856 FAM231BA6NCW3 169 aa14.01□□□□□ -0.17
CCDC88C-203ENST00000389856 IGLC2P0DOY2 106 aa14.01□□□□□ -0.17
CCDC88C-203ENST00000389856 PSG9Q00887 426 aa14.01□□□□□ -0.17
CCDC88C-203ENST00000389856 ARL6IP6Q8N6S5 226 aa14.01□□□□□ -0.17
CCDC88C-203ENST00000389856 UBE2E2Q96LR5 201 aa14.01□□□□□ -0.17
CCDC88C-203ENST00000389856 TRBV19A0A075B6N1 114 aa14.01□□□□□ -0.17
CCDC88C-203ENST00000389856 TRAV34A0A0B4J273 112 aa14.01□□□□□ -0.17
CCDC88C-203ENST00000389856 HILS1P60008 231 aa14.01□□□□□ -0.17
CCDC88C-203ENST00000389856 GNG5P63218 68 aa14.01□□□□□ -0.17
CCDC88C-203ENST00000389856 FAM106AQ4KMX7 169 aa14.01□□□□□ -0.17
CCDC88C-203ENST00000389856 GFRA4Q9GZZ7 299 aa14.01□□□□□ -0.17
CCDC88C-203ENST00000389856 AAMDCQ9H7C9 122 aa14.01□□□□□ -0.17
CCDC88C-203ENST00000389856 SVEP1Q4LDE5 3571 aa14□□□□□ -0.17
CCDC88C-203ENST00000389856 A0A1W2PS18 150 aa14□□□□□ -0.17
CCDC88C-203ENST00000389856 A8MWL6 223 aa14□□□□□ -0.17
CCDC88C-203ENST00000389856 K7EQM0 130 aa14□□□□□ -0.17
CCDC88C-203ENST00000389856 LGALS1P09382 135 aaKnown RBP14□□□□□ -0.17
CCDC88C-203ENST00000389856 BMI1P35226 326 aa14□□□□□ -0.17
CCDC88C-203ENST00000389856 BAGE3Q86Y29 109 aa14□□□□□ -0.17
CCDC88C-203ENST00000389856 TMEM256Q8N2U0 113 aa14□□□□□ -0.17
CCDC88C-203ENST00000389856 OR4B1Q8NGF8 309 aa14□□□□□ -0.17
CCDC88C-203ENST00000389856 MYOZ3Q8TDC0 251 aa14□□□□□ -0.17
CCDC88C-203ENST00000389856 ZNF586Q9NXT0 402 aa14□□□□□ -0.17
CCDC88C-203ENST00000389856 CSMD1Q96PZ7 3565 aa13.99□□□□□ -0.17
CCDC88C-203ENST00000389856 BUB3O43684 328 aa13.99□□□□□ -0.17
CCDC88C-203ENST00000389856 ZNF253O75346 499 aa13.99□□□□□ -0.17
CCDC88C-203ENST00000389856 Q6ZSV7 163 aa13.99□□□□□ -0.17
CCDC88C-203ENST00000389856 KLHDC1Q8N7A1 406 aa13.99□□□□□ -0.17
CCDC88C-203ENST00000389856 RPP21Q9H633 154 aaKnown RBP13.99□□□□□ -0.17
CCDC88C-203ENST00000389856 CELSR1Q9NYQ6 3014 aa13.98□□□□□ -0.17
CCDC88C-203ENST00000389856 SERTM2A0A1B0GWG4 89 aa13.98□□□□□ -0.17
CCDC88C-203ENST00000389856 MRPS12O15235 138 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-203ENST00000389856 APCSP02743 223 aa13.98□□□□□ -0.17
CCDC88C-203ENST00000389856 RPLP1P05386 114 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-203ENST00000389856 TCL1AP56279 114 aa13.98□□□□□ -0.17
CCDC88C-203ENST00000389856 CDPF1Q6NVV7 123 aa13.98□□□□□ -0.17
CCDC88C-203ENST00000389856 LCNL1Q6ZST4 164 aa13.98□□□□□ -0.17
CCDC88C-203ENST00000389856 NHLRC2Q8NBF2 726 aa13.98□□□□□ -0.17
CCDC88C-203ENST00000389856 C19orf71A6NCJ1 209 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 RAB4BP61018 213 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 Q86TA4 180 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 GPHB5Q86YW7 130 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 TMEM75Q8N9X5 138 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 DAZAP1Q96EP5 407 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 ZNF414Q96IQ9 312 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 SMR3AQ99954 134 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 ESM1Q9NQ30 184 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 ZFP30Q9Y2G7 519 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 UFC1Q9Y3C8 167 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 A0A087X0K7 114 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 CLPSL1A2RUU4 121 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 GRIFINA4D1Z8 144 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 FBLL1A6NHQ2 334 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 ZNF785A8K8V0 405 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 K7EMT4 169 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 TRBV12-3P01733 135 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 P01737 135 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 NUP35Q8NFH5 326 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 WFDC12Q8WWY7 111 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 C16orf95Q9H693 158 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 TP53TG3Q9ULZ0 132 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 U3KQE9 123 aa13.97□□□□□ -0.17
CCDC88C-203ENST00000389856 ACANP16112 2415 aa13.96□□□□□ -0.17
CCDC88C-203ENST00000389856 SONP18583 2426 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-203ENST00000389856 HIVEP2P31629 2446 aa13.96□□□□□ -0.17
CCDC88C-203ENST00000389856 SERF1AO75920 110 aa13.96□□□□□ -0.17
CCDC88C-203ENST00000389856 CSN1S1P47710 185 aa13.96□□□□□ -0.17
CCDC88C-203ENST00000389856 DEFA6Q01524 100 aa13.96□□□□□ -0.17
CCDC88C-203ENST00000389856 MRPL54Q6P161 138 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-203ENST00000389856 DAZ1Q9NQZ3 744 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-203ENST00000389856 IGHV3OR16-8A0A075B7F1 116 aa13.95□□□□□ -0.18
CCDC88C-203ENST00000389856 NPIPB6E9PJ23 425 aa13.95□□□□□ -0.18
CCDC88C-203ENST00000389856 PRR27Q6MZM9 219 aa13.95□□□□□ -0.18
CCDC88C-203ENST00000389856 NEU1Q99519 415 aa13.95□□□□□ -0.18
CCDC88C-203ENST00000389856 SLC50A1Q9BRV3 221 aa13.95□□□□□ -0.18
CCDC88C-203ENST00000389856 CLEC5AQ9NY25 188 aa13.95□□□□□ -0.18
CCDC88C-203ENST00000389856 MXRA5Q9NR99 2828 aa13.95□□□□□ -0.18
CCDC88C-203ENST00000389856 DDTP30046 118 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms