RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 KCNS1Q96KK3 526 aa12.12□□□□□ -0.47
CCDC40-202ENST00000374876 HLA-DRB1P01911 266 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 FAM106CPP0CH98 169 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 IGLC2P0DOY2 106 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 CD33P20138 364 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 CAMPP49913 170 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 PRNTQ86SH4 94 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 PRSS22Q9GZN4 317 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 TBL2Q9Y4P3 447 aaKnown RBP12.11□□□□□ -0.47
CCDC40-202ENST00000374876 C19orf71A6NCJ1 209 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 GPX1P07203 203 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 TCF24Q7RTU0 167 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 C17orf77Q96MU5 243 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 RCHY1Q96PM5 261 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 DUX5Q96PT3 197 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 C21orf62Q9NYP8 219 aa12.11□□□□□ -0.47
CCDC40-202ENST00000374876 GDF5OSQ5U4N7 250 aa12.1□□□□□ -0.47
CCDC40-202ENST00000374876 TOMM20LQ6UXN7 152 aa12.1□□□□□ -0.47
CCDC40-202ENST00000374876 LYPD1Q8N2G4 141 aa12.1□□□□□ -0.47
CCDC40-202ENST00000374876 ZNF418Q8TF45 676 aaPredicted RBP12.1□□□□□ -0.47
CCDC40-202ENST00000374876 AJUBAQ96IF1 538 aa12.1□□□□□ -0.47
CCDC40-202ENST00000374876 C1RLQ9NZP8 487 aa12.1□□□□□ -0.47
CCDC40-202ENST00000374876 K7EQM0 130 aa12.1□□□□□ -0.47
CCDC40-202ENST00000374876 IGLV2-11P01706 119 aa12.1□□□□□ -0.47
CCDC40-202ENST00000374876 RIPPLY3P57055 190 aa12.1□□□□□ -0.47
CCDC40-202ENST00000374876 ESM1Q9NQ30 184 aa12.1□□□□□ -0.47
CCDC40-202ENST00000374876 A0A1W2PS18 150 aa12.09□□□□□ -0.47
CCDC40-202ENST00000374876 TCF21O43680 179 aa12.09□□□□□ -0.47
CCDC40-202ENST00000374876 SCGB2A1O75556 95 aa12.09□□□□□ -0.47
CCDC40-202ENST00000374876 OR2J3O76001 311 aa12.09□□□□□ -0.47
CCDC40-202ENST00000374876 PMCHP20382 165 aa12.09□□□□□ -0.47
CCDC40-202ENST00000374876 AMTP48728 403 aa12.09□□□□□ -0.47
CCDC40-202ENST00000374876 SIGLEC15Q6ZMC9 328 aa12.09□□□□□ -0.47
CCDC40-202ENST00000374876 IGHV7-81A0A0B4J1V7 117 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 TRBV6-1A0A0K0K1D8 114 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 A0A1B0GXF2 115 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 F8W735 103 aaPredicted RBP12.08□□□□□ -0.48
CCDC40-202ENST00000374876 NDUFB8O95169 186 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 HBBP68871 147 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 C1orf194Q5T5A4 169 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 TMEM75Q8N9X5 138 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 OR2D3Q8NGH3 330 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 GTSF1Q8WW33 167 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 ZNF414Q96IQ9 312 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 NDUFAF3Q9BU61 184 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 SSBP4Q9BWG4 385 aaPredicted RBP12.08□□□□□ -0.48
CCDC40-202ENST00000374876 GFRA4Q9GZZ7 299 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 MRPS12O15235 138 aaKnown RBP12.08□□□□□ -0.48
CCDC40-202ENST00000374876 IGHV3-23P01764 117 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 Q6YL49 198 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 Q8N9W7 124 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 C18orf32Q8TCD1 76 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 PGLYRP4Q96LB8 373 aa12.08□□□□□ -0.48
CCDC40-202ENST00000374876 OR2T8A6NH00 312 aa12.07□□□□□ -0.48
CCDC40-202ENST00000374876 HOXA3O43365 443 aaPredicted RBP12.07□□□□□ -0.48
CCDC40-202ENST00000374876 ZNF324O75467 553 aaPredicted RBP12.07□□□□□ -0.48
CCDC40-202ENST00000374876 EGR2P11161 476 aaPredicted RBP12.07□□□□□ -0.48
CCDC40-202ENST00000374876 HILS1P60008 231 aa12.07□□□□□ -0.48
CCDC40-202ENST00000374876 RBPMS2Q6ZRY4 209 aaKnown RBP12.07□□□□□ -0.48
CCDC40-202ENST00000374876 NRN1Q9NPD7 142 aa12.07□□□□□ -0.48
CCDC40-202ENST00000374876 FAM231BA6NCW3 169 aa12.06□□□□□ -0.48
CCDC40-202ENST00000374876 NPIPB6E9PJ23 425 aa12.06□□□□□ -0.48
CCDC40-202ENST00000374876 KRTDAPP60985 99 aa12.06□□□□□ -0.48
CCDC40-202ENST00000374876 PDE6HQ13956 83 aa12.06□□□□□ -0.48
CCDC40-202ENST00000374876 OR4B1Q8NGF8 309 aa12.06□□□□□ -0.48
CCDC40-202ENST00000374876 VN1R17PQ8TDU5 208 aa12.06□□□□□ -0.48
CCDC40-202ENST00000374876 AAMDCQ9H7C9 122 aa12.06□□□□□ -0.48
CCDC40-202ENST00000374876 FBXL7Q9UJT9 491 aa12.06□□□□□ -0.48
CCDC40-202ENST00000374876 ZFP30Q9Y2G7 519 aa12.06□□□□□ -0.48
CCDC40-202ENST00000374876 PSG3Q16557 428 aa12.06□□□□□ -0.48
CCDC40-202ENST00000374876 ALKBH7Q9BT30 221 aaPredicted RBP12.06□□□□□ -0.48
CCDC40-202ENST00000374876 PSG8Q9UQ74 426 aa12.06□□□□□ -0.48
CCDC40-202ENST00000374876 KIR2DL5BA0A0G2JN68 375 aa12.05□□□□□ -0.48
CCDC40-202ENST00000374876 KIR2DL5BA0A0G2JPC4 375 aa12.05□□□□□ -0.48
CCDC40-202ENST00000374876 DNAJC9-AS1A6NH13 148 aa12.05□□□□□ -0.48
CCDC40-202ENST00000374876 DIRC3C9JPN6 131 aa12.05□□□□□ -0.48
CCDC40-202ENST00000374876 IGHV4-59P01825 116 aa12.05□□□□□ -0.48
CCDC40-202ENST00000374876 KLF5Q13887 457 aaPredicted RBP12.05□□□□□ -0.48
CCDC40-202ENST00000374876 TEX43Q6ZNM6 134 aa12.05□□□□□ -0.48
CCDC40-202ENST00000374876 KIR2DL5AQ8N109 375 aa12.05□□□□□ -0.48
CCDC40-202ENST00000374876 ZC2HC1AQ96GY0 325 aa12.04□□□□□ -0.48
CCDC40-202ENST00000374876 TXN2Q99757 166 aa12.04□□□□□ -0.48
CCDC40-202ENST00000374876 M0R3E3 92 aa12.04□□□□□ -0.48
CCDC40-202ENST00000374876 CTSGP08311 255 aa12.04□□□□□ -0.48
CCDC40-202ENST00000374876 RPL7P18124 248 aaKnown RBP12.04□□□□□ -0.48
CCDC40-202ENST00000374876 NTF3P20783 257 aa12.04□□□□□ -0.48
CCDC40-202ENST00000374876 CSN1S1P47710 185 aa12.04□□□□□ -0.48
CCDC40-202ENST00000374876 ECSCRQ19T08 205 aa12.04□□□□□ -0.48
CCDC40-202ENST00000374876 UNQ5815/PRO19632Q6UWF5 114 aa12.04□□□□□ -0.48
CCDC40-202ENST00000374876 FAM19A2Q8N3H0 131 aa12.04□□□□□ -0.48
CCDC40-202ENST00000374876 MEGF9Q9H1U4 602 aa12.04□□□□□ -0.48
CCDC40-202ENST00000374876 PRB4P10163 310 aaPredicted RBP12.03□□□□□ -0.48
CCDC40-202ENST00000374876 PSG9Q00887 426 aa12.03□□□□□ -0.48
CCDC40-202ENST00000374876 FAM110DQ8TAY7 271 aaPredicted RBP12.03□□□□□ -0.48
CCDC40-202ENST00000374876 JMJD8Q96S16 334 aa12.03□□□□□ -0.48
CCDC40-202ENST00000374876 VAMP8Q9BV40 100 aa12.03□□□□□ -0.48
CCDC40-202ENST00000374876 RABAC1Q9UI14 185 aa12.03□□□□□ -0.48
CCDC40-202ENST00000374876 RNF114Q9Y508 228 aa12.03□□□□□ -0.48
CCDC40-202ENST00000374876 ATRQ13535 2644 aa12.03□□□□□ -0.48
CCDC40-202ENST00000374876 HSBP1O75506 76 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms