RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 IGFL4Q6B9Z1 124 aa16.16■□□□□ 0.18
CCDC88B-203ENST00000359902 CYB5R2Q6BCY4 276 aa16.16■□□□□ 0.18
CCDC88B-203ENST00000359902 LCN12Q6JVE5 192 aa16.16■□□□□ 0.18
CCDC88B-203ENST00000359902 COX8CQ7Z4L0 72 aa16.16■□□□□ 0.18
CCDC88B-203ENST00000359902 C5orf56Q8N8D9 126 aa16.16■□□□□ 0.18
CCDC88B-203ENST00000359902 C2orf70A6NJV1 201 aa16.15■□□□□ 0.18
CCDC88B-203ENST00000359902 RPLP1P05386 114 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-203ENST00000359902 GATD1Q8NB37 220 aa16.15■□□□□ 0.18
CCDC88B-203ENST00000359902 CHCHD1Q96BP2 118 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-203ENST00000359902 CCDC140Q96MF4 163 aa16.15■□□□□ 0.18
CCDC88B-203ENST00000359902 S100A7P31151 101 aa16.14■□□□□ 0.18
CCDC88B-203ENST00000359902 SPATA45Q537H7 98 aa16.14■□□□□ 0.18
CCDC88B-203ENST00000359902 PRR25Q96S07 402 aa16.14■□□□□ 0.18
CCDC88B-203ENST00000359902 HLA-DMBP28068 263 aa16.14■□□□□ 0.17
CCDC88B-203ENST00000359902 SAPCD1Q5SSQ6 148 aa16.14■□□□□ 0.17
CCDC88B-203ENST00000359902 Q6AWC8 147 aa16.14■□□□□ 0.17
CCDC88B-203ENST00000359902 GOLT1BQ9Y3E0 138 aa16.14■□□□□ 0.17
CCDC88B-203ENST00000359902 SH2D1AO60880 128 aa16.13■□□□□ 0.17
CCDC88B-203ENST00000359902 PMCHL1Q16048 86 aa16.13■□□□□ 0.17
CCDC88B-203ENST00000359902 CLEC19AQ6UXS0 136 aa16.13■□□□□ 0.17
CCDC88B-203ENST00000359902 VGLL1Q99990 258 aa16.13■□□□□ 0.17
CCDC88B-203ENST00000359902 IGHV3OR16-10A0A075B7F0 116 aa16.13■□□□□ 0.17
CCDC88B-203ENST00000359902 A0A1B0GW15 77 aa16.13■□□□□ 0.17
CCDC88B-203ENST00000359902 DLEU1O43261 78 aa16.13■□□□□ 0.17
CCDC88B-203ENST00000359902 BUB3O43684 328 aa16.13■□□□□ 0.17
CCDC88B-203ENST00000359902 LINC00614P0C842 121 aa16.13■□□□□ 0.17
CCDC88B-203ENST00000359902 TMEM208Q9BTX3 173 aa16.13■□□□□ 0.17
CCDC88B-203ENST00000359902 CACNA1BQ00975 2339 aa16.13■□□□□ 0.17
CCDC88B-203ENST00000359902 TMEM189A5PLL7 270 aa16.12■□□□□ 0.17
CCDC88B-203ENST00000359902 FBLL1A6NHQ2 334 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-203ENST00000359902 GAGE1Q13065 139 aa16.12■□□□□ 0.17
CCDC88B-203ENST00000359902 TMEM219Q86XT9 240 aa16.12■□□□□ 0.17
CCDC88B-203ENST00000359902 TPPP3Q9BW30 176 aa16.12■□□□□ 0.17
CCDC88B-203ENST00000359902 CBY1Q9Y3M2 126 aa16.12■□□□□ 0.17
CCDC88B-203ENST00000359902 CLPSL1A2RUU4 121 aa16.12■□□□□ 0.17
CCDC88B-203ENST00000359902 GOSR1O95249 250 aa16.12■□□□□ 0.17
CCDC88B-203ENST00000359902 CLEC5AQ9NY25 188 aa16.12■□□□□ 0.17
CCDC88B-203ENST00000359902 PKD1L2Q7Z442 2459 aa16.11■□□□□ 0.17
CCDC88B-203ENST00000359902 IGHV1-24A0A0C4DH33 117 aa16.11■□□□□ 0.17
CCDC88B-203ENST00000359902 IGHV4-61A0A0C4DH41 118 aa16.11■□□□□ 0.17
CCDC88B-203ENST00000359902 ATOH7Q8N100 152 aa16.11■□□□□ 0.17
CCDC88B-203ENST00000359902 Q8TAT8 98 aa16.11■□□□□ 0.17
CCDC88B-203ENST00000359902 PIFOQ8TCI5 191 aa16.11■□□□□ 0.17
CCDC88B-203ENST00000359902 TMSB15BA0A087X1C1 80 aa16.11■□□□□ 0.17
CCDC88B-203ENST00000359902 IGHV1-69DA0A0B4J2H0 117 aa16.11■□□□□ 0.17
CCDC88B-203ENST00000359902 IGHV1-69P01742 117 aa16.11■□□□□ 0.17
CCDC88B-203ENST00000359902 EEF1AKMT3Q96AZ1 226 aa16.11■□□□□ 0.17
CCDC88B-203ENST00000359902 RAB9AP51151 201 aa16.1■□□□□ 0.17
CCDC88B-203ENST00000359902 ZNF138P52744 262 aa16.1■□□□□ 0.17
CCDC88B-203ENST00000359902 LYZL1Q6UWQ5 148 aa16.1■□□□□ 0.17
CCDC88B-203ENST00000359902 ABCA2Q9BZC7 2435 aa16.1■□□□□ 0.17
CCDC88B-203ENST00000359902 A0A087X0K7 114 aa16.1■□□□□ 0.17
CCDC88B-203ENST00000359902 TRBV7-1A0A0A6YYK4 115 aa16.1■□□□□ 0.17
CCDC88B-203ENST00000359902 PIMREGQ9BSJ6 248 aa16.1■□□□□ 0.17
CCDC88B-203ENST00000359902 ZNF80P51504 273 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-203ENST00000359902 SPATA12Q7Z6I5 190 aa16.09■□□□□ 0.17
CCDC88B-203ENST00000359902 MOB4Q9Y3A3 225 aa16.09■□□□□ 0.17
CCDC88B-203ENST00000359902 MAJINQ3KP22 176 aa16.08■□□□□ 0.17
CCDC88B-203ENST00000359902 BRD3OSQ6XYD6 125 aa16.08■□□□□ 0.17
CCDC88B-203ENST00000359902 ZNF493Q6ZR52 646 aa16.08■□□□□ 0.17
CCDC88B-203ENST00000359902 CCL19Q99731 98 aa16.08■□□□□ 0.17
CCDC88B-203ENST00000359902 IGHV3-66A0A0C4DH42 116 aa16.08■□□□□ 0.16
CCDC88B-203ENST00000359902 IGLC3P0DOY3 106 aa16.08■□□□□ 0.16
CCDC88B-203ENST00000359902 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.08■□□□□ 0.16
CCDC88B-203ENST00000359902 C10orf105Q8TEF2 133 aa16.08■□□□□ 0.16
CCDC88B-203ENST00000359902 TMEM70Q9BUB7 260 aa16.08■□□□□ 0.16
CCDC88B-203ENST00000359902 SPTAN1Q13813 2472 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-203ENST00000359902 C19orf54Q5BKX5 351 aa16.07■□□□□ 0.16
CCDC88B-203ENST00000359902 DMRTA1Q5VZB9 504 aa16.07■□□□□ 0.16
CCDC88B-203ENST00000359902 LINC00173Q6ZV60 143 aa16.07■□□□□ 0.16
CCDC88B-203ENST00000359902 ATP5G2Q06055 141 aa16.07■□□□□ 0.16
CCDC88B-203ENST00000359902 TRAV41A0A0B4J266 112 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 TRAV40A0A0B4J280 105 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 PRAC2D3DTV9 90 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 CRXO43186 299 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 ZNF575Q86XF7 245 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 UQCR10Q9UDW1 63 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 IGHV3OR16-13A0A075B7E8 117 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 IGHV3-74A0A0B4J1X5 117 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 TMEM213A2RRL7 107 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 LEPROTL1O95214 131 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 CSN3P07498 182 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 BMI1P35226 326 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 ERCC8Q13216 396 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 RNF182Q8N6D2 247 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 MEGF9Q9H1U4 602 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 LINC00527Q9UJ94 153 aa16.06■□□□□ 0.16
CCDC88B-203ENST00000359902 KLHDC1Q8N7A1 406 aa16.05■□□□□ 0.16
CCDC88B-203ENST00000359902 TRAV9-2A0A087WT02 112 aa16.05■□□□□ 0.16
CCDC88B-203ENST00000359902 NPSP0C0P6 89 aa16.05■□□□□ 0.16
CCDC88B-203ENST00000359902 CRIP2P52943 208 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-203ENST00000359902 OR5AL1P0C617 328 aa16.04■□□□□ 0.16
CCDC88B-203ENST00000359902 RPS20P60866 119 aaKnown RBP16.04■□□□□ 0.16
CCDC88B-203ENST00000359902 METTL26Q96S19 204 aa16.04■□□□□ 0.16
CCDC88B-203ENST00000359902 SLC50A1Q9BRV3 221 aa16.04■□□□□ 0.16
CCDC88B-203ENST00000359902 SYS1-DBNDD2H3BUS1 97 aa16.03■□□□□ 0.16
CCDC88B-203ENST00000359902 NDUFS8O00217 210 aa16.03■□□□□ 0.16
CCDC88B-203ENST00000359902 ZNF207O43670 478 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-203ENST00000359902 U3KQE9 123 aa16.03■□□□□ 0.16
CCDC88B-203ENST00000359902 PIEZO1Q92508 2521 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms