RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 UBE2E2Q96LR5 201 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 SRD5A3Q9H8P0 318 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 A0A1W2PS18 150 aa10.22□□□□□ -0.77
HMGB1-202ENST00000339872 ZNF705FA8MVS1 300 aaPredicted RBP10.22□□□□□ -0.77
HMGB1-202ENST00000339872 GATCO43716 136 aaKnown RBP10.22□□□□□ -0.77
HMGB1-202ENST00000339872 CA1P00915 261 aaPredicted RBP10.22□□□□□ -0.77
HMGB1-202ENST00000339872 C8orf86Q6ZUL3 223 aa10.22□□□□□ -0.77
HMGB1-202ENST00000339872 IGHV7-4-1A0A0J9YVY3 117 aa10.22□□□□□ -0.77
HMGB1-202ENST00000339872 MEOX2P50222 304 aa10.22□□□□□ -0.77
HMGB1-202ENST00000339872 TCL1AP56279 114 aa10.22□□□□□ -0.77
HMGB1-202ENST00000339872 LINC00322Q6ZN03 302 aaPredicted RBP10.22□□□□□ -0.77
HMGB1-202ENST00000339872 GPHB5Q86YW7 130 aa10.22□□□□□ -0.77
HMGB1-202ENST00000339872 ARL6IP6Q8N6S5 226 aa10.22□□□□□ -0.77
HMGB1-202ENST00000339872 BTF3L4Q96K17 158 aa10.22□□□□□ -0.77
HMGB1-202ENST00000339872 BIN3Q9NQY0 253 aa10.22□□□□□ -0.77
HMGB1-202ENST00000339872 TYMSP04818 313 aa10.21□□□□□ -0.77
HMGB1-202ENST00000339872 SRD5A1P18405 259 aa10.21□□□□□ -0.77
HMGB1-202ENST00000339872 LCN12Q6JVE5 192 aa10.21□□□□□ -0.77
HMGB1-202ENST00000339872 RHPN1-AS1Q9BWJ2 59 aa10.21□□□□□ -0.77
HMGB1-202ENST00000339872 TMEM160Q9NX00 188 aa10.21□□□□□ -0.77
HMGB1-202ENST00000339872 ZFP30Q9Y2G7 519 aa10.21□□□□□ -0.77
HMGB1-202ENST00000339872 IGHV4OR15-8A0A075B7B6 117 aa10.21□□□□□ -0.78
HMGB1-202ENST00000339872 A0A087WW49 117 aa10.21□□□□□ -0.78
HMGB1-202ENST00000339872 EDN2P20800 178 aa10.21□□□□□ -0.78
HMGB1-202ENST00000339872 TRAV9-1A0A075B6T8 112 aa10.2□□□□□ -0.78
HMGB1-202ENST00000339872 TRAV8-2A0A0B4J237 113 aa10.2□□□□□ -0.78
HMGB1-202ENST00000339872 S100A6P06703 90 aa10.2□□□□□ -0.78
HMGB1-202ENST00000339872 GBGT1Q8N5D6 347 aa10.2□□□□□ -0.78
HMGB1-202ENST00000339872 ZC2HC1AQ96GY0 325 aa10.2□□□□□ -0.78
HMGB1-202ENST00000339872 C16orf92Q96LL3 132 aa10.2□□□□□ -0.78
HMGB1-202ENST00000339872 ZNF492Q9P255 531 aa10.2□□□□□ -0.78
HMGB1-202ENST00000339872 UFC1Q9Y3C8 167 aa10.2□□□□□ -0.78
HMGB1-202ENST00000339872 K7EMT4 169 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 LY6G6DO95868 133 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 P01737 135 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 RPL11P62913 178 aaKnown RBP10.19□□□□□ -0.78
HMGB1-202ENST00000339872 KHDC1LQ5JSQ8 128 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 DAZAP1Q96EP5 407 aaKnown RBP10.19□□□□□ -0.78
HMGB1-202ENST00000339872 VGLL1Q99990 258 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 SELENOKQ9Y6D0 94 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 SMIM27A0A1W2PRY6 76 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 C19orf71A6NCJ1 209 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 PRAC2D3DTV9 90 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 C18orf65Q6ZTR6 163 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 Q8TAT8 98 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 FRZBQ92765 325 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 C8orf49Q96NF6 230 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 SAV1Q9H4B6 383 aaPredicted RBP10.19□□□□□ -0.78
HMGB1-202ENST00000339872 RPP21Q9H633 154 aaKnown RBP10.19□□□□□ -0.78
HMGB1-202ENST00000339872 SMPXQ9UHP9 88 aa10.19□□□□□ -0.78
HMGB1-202ENST00000339872 SPINK4O60575 86 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 ZNF418Q8TF45 676 aaPredicted RBP10.18□□□□□ -0.78
HMGB1-202ENST00000339872 CUBNO60494 3623 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 IGKV3-7A0A075B6H7 116 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 HIST1H2BKO60814 126 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 HIST1H2BJP06899 126 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 RNASE1P07998 156 aaKnown RBP10.18□□□□□ -0.78
HMGB1-202ENST00000339872 TRGC1P0CF51 173 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 HIST1H2BOP23527 126 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 HOXD3P31249 432 aaPredicted RBP10.18□□□□□ -0.78
HMGB1-202ENST00000339872 HIST1H2BBP33778 126 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 SYNJ2BPP57105 145 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 HIST1H2BDP58876 126 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 HIST1H2BCP62807 126 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 HIST2H2BEQ16778 126 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 DEFB136Q30KP8 78 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.18□□□□□ -0.78
HMGB1-202ENST00000339872 HIST1H2BHQ93079 126 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 HIST1H2BNQ99877 126 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 HIST1H2BMQ99879 126 aa10.18□□□□□ -0.78
HMGB1-202ENST00000339872 TMEM213A2RRL7 107 aa10.17□□□□□ -0.78
HMGB1-202ENST00000339872 FBLL1A6NHQ2 334 aaKnown RBP10.17□□□□□ -0.78
HMGB1-202ENST00000339872 PHOX2AO14813 284 aa10.17□□□□□ -0.78
HMGB1-202ENST00000339872 SNRPEP62304 92 aaKnown RBP10.17□□□□□ -0.78
HMGB1-202ENST00000339872 ERCC8Q13216 396 aa10.17□□□□□ -0.78
HMGB1-202ENST00000339872 TCTEX1D4Q5JR98 221 aa10.17□□□□□ -0.78
HMGB1-202ENST00000339872 ACTL10Q5JWF8 245 aa10.17□□□□□ -0.78
HMGB1-202ENST00000339872 NRN1Q9NPD7 142 aa10.17□□□□□ -0.78
HMGB1-202ENST00000339872 CT45A10P0DMU9 189 aa10.17□□□□□ -0.78
HMGB1-202ENST00000339872 TSKUQ8WUA8 353 aa10.17□□□□□ -0.78
HMGB1-202ENST00000339872 MRPL53Q96EL3 112 aaKnown RBP10.17□□□□□ -0.78
HMGB1-202ENST00000339872 PRR25Q96S07 402 aa10.17□□□□□ -0.78
HMGB1-202ENST00000339872 ANK3Q12955 4377 aaKnown RBP10.17□□□□□ -0.78
HMGB1-202ENST00000339872 RBAKDNA6NC62 111 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 CDX1P47902 265 aaPredicted RBP10.16□□□□□ -0.78
HMGB1-202ENST00000339872 FABP9Q0Z7S8 132 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 SAPCD1Q5SSQ6 148 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 REC114Q7Z4M0 266 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 NEU1Q99519 415 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 CLEC5AQ9NY25 188 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 TRAPPC1Q9Y5R8 145 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 IZUMO1RA6ND01 250 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 A8MWP6 167 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 NPIPB6E9PJ23 425 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 SOCS3O14543 225 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 BMI1P35226 326 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 HILS1P60008 231 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 RPL19P84098 196 aaKnown RBP10.16□□□□□ -0.78
HMGB1-202ENST00000339872 CT83Q5H943 113 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 HIST2H2BDQ6DRA6 164 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms