RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 FAM231DQ6ZW35 169 aa8.67□□□□□ -1.02
CD44-201ENST00000263398 C5orf42Q9H799 3197 aa8.67□□□□□ -1.02
CD44-201ENST00000263398 GGTLC3B5MD39 225 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 NDUFB8O95169 186 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 SAA4P35542 130 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 TDGF1P3P51864 188 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 HAPLN4Q86UW8 402 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 RCHY1Q96PM5 261 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 RHPN1-AS1Q9BWJ2 59 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 LAMA3Q16787 3333 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 PLXNA2O75051 1894 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 TRAV12-3A0A0B4J271 114 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 SMKR1H3BMG3 65 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 C15orf65H3BRN8 121 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 CMC4P56277 68 aaPredicted RBP8.66□□□□□ -1.02
CD44-201ENST00000263398 TMEM95Q3KNT9 176 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 LINC00311Q8N616 119 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 CHCHD5Q9BSY4 110 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 MED13Q9UHV7 2174 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 IGHV3-64A0A075B6Q5 118 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 IGLV1-44P01699 117 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 LURAP1LQ8IV03 231 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 TMEM75Q8N9X5 138 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 CSTL1Q9H114 145 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 A0A0U1RRA0 63 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 EREGO14944 169 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 BPESC1Q9GZL8 116 aa8.66□□□□□ -1.02
CD44-201ENST00000263398 TRBV19A0A075B6N1 114 aa8.65□□□□□ -1.02
CD44-201ENST00000263398 ADARB2-AS1A8MUL3 147 aa8.65□□□□□ -1.02
CD44-201ENST00000263398 M0R2P5 195 aa8.65□□□□□ -1.02
CD44-201ENST00000263398 IGFL3Q6UXB1 125 aa8.65□□□□□ -1.02
CD44-201ENST00000263398 C11orf52Q96A22 123 aa8.65□□□□□ -1.02
CD44-201ENST00000263398 MCRIP2Q9BUT9 160 aaKnown RBP8.65□□□□□ -1.02
CD44-201ENST00000263398 CUL9Q8IWT3 2517 aa8.65□□□□□ -1.02
CD44-201ENST00000263398 RPL36AP83881 106 aaKnown RBP8.65□□□□□ -1.02
CD44-201ENST00000263398 KIR3DS1Q14943 382 aa8.65□□□□□ -1.02
CD44-201ENST00000263398 RPL36ALQ969Q0 106 aaKnown RBP8.65□□□□□ -1.02
CD44-201ENST00000263398 V9GYV3 84 aa8.65□□□□□ -1.02
CD44-201ENST00000263398 IGLV3-9A0A075B6K5 115 aa8.65□□□□□ -1.03
CD44-201ENST00000263398 TNFRSF6BO95407 300 aa8.65□□□□□ -1.03
CD44-201ENST00000263398 MALP21145 153 aa8.65□□□□□ -1.03
CD44-201ENST00000263398 CEACAM8P31997 349 aaPredicted RBP8.65□□□□□ -1.03
CD44-201ENST00000263398 C11orf44Q8N8P7 122 aa8.65□□□□□ -1.03
CD44-201ENST00000263398 DAZ1Q9NQZ3 744 aaKnown RBP8.65□□□□□ -1.03
CD44-201ENST00000263398 LOXP28300 417 aaPredicted RBP8.64□□□□□ -1.03
CD44-201ENST00000263398 RIPPLY3P57055 190 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 WT1-ASQ06250 92 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 ZNF415Q09FC8 603 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 FAM104BQ5XKR9 115 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 TEX43Q6ZNM6 134 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 TMEM86BQ8N661 226 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 ATXN8Q156A1 80 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 POU2AF1Q16633 256 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 PIP4P2Q8N4L2 257 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 LYPD6BQ8NI32 183 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 SELENOKQ9Y6D0 94 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 FAM110DQ8TAY7 271 aaPredicted RBP8.64□□□□□ -1.03
CD44-201ENST00000263398 LSM4Q9Y4Z0 139 aaKnown RBP8.64□□□□□ -1.03
CD44-201ENST00000263398 TEX36Q5VZQ5 186 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 ZNF114Q8NC26 417 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 DPH3Q96FX2 82 aa8.64□□□□□ -1.03
CD44-201ENST00000263398 SLC25A20O43772 301 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 IGHV2-70P01814 119 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 UBE2E1P51965 193 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 ZNF134P52741 427 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 KIF26AQ9ULI4 1882 aaPredicted RBP8.63□□□□□ -1.03
CD44-201ENST00000263398 TMEM213A2RRL7 107 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 PRSS46E5RG02 174 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 OVOL3O00110 214 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 ERCC8Q13216 396 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 DUX4L9Q6RFH8 374 aaPredicted RBP8.63□□□□□ -1.03
CD44-201ENST00000263398 SPOCK3Q9BQ16 436 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 DTX1Q86Y01 620 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 DLX4Q92988 240 aaPredicted RBP8.63□□□□□ -1.03
CD44-201ENST00000263398 SNHG12Q9BXW3 62 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 COX11Q9Y6N1 276 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 STPG4Q8N801 248 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 CHAC1Q9BUX1 264 aa8.63□□□□□ -1.03
CD44-201ENST00000263398 IGLC2P0DOY2 106 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 IGLC3P0DOY3 106 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 GAGE12BA1L429 117 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 ATP6V0E1O15342 81 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 GNLYP22749 145 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 LINC00158P58513 81 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 PRR20EP86478 221 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 PRR20CP86479 221 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 PRR20DP86480 221 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 PRR20BP86481 221 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 PRR20AP86496 221 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 SLAQ13239 276 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 RNF166Q96A37 237 aaPredicted RBP8.62□□□□□ -1.03
CD44-201ENST00000263398 TMEM14CQ9P0S9 112 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 TRAV8-4A0A0B4J246 113 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 Q6ZWC4 215 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 PRADC1Q9BSG0 188 aa8.62□□□□□ -1.03
CD44-201ENST00000263398 TRGV1A0A0A0MS02 117 aa8.61□□□□□ -1.03
CD44-201ENST00000263398 IGHV3-73A0A0B4J1V6 119 aa8.61□□□□□ -1.03
CD44-201ENST00000263398 MMP23AO75900 390 aa8.61□□□□□ -1.03
CD44-201ENST00000263398 RNF138Q8WVD3 245 aa8.61□□□□□ -1.03
CD44-201ENST00000263398 SMIM27A0A1W2PRY6 76 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms