RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ORMDL3Q8N138 153 aa14.62□□□□□ -0.07
CPSF3-201ENST00000238112 DYNAPQ8N1N2 210 aa14.62□□□□□ -0.07
CPSF3-201ENST00000238112 PRELID3AQ96N28 172 aa14.62□□□□□ -0.07
CPSF3-201ENST00000238112 PRR25Q96S07 402 aa14.62□□□□□ -0.07
CPSF3-201ENST00000238112 ABCA4P78363 2273 aa14.62□□□□□ -0.07
CPSF3-201ENST00000238112 FBLL1A6NHQ2 334 aaKnown RBP14.61□□□□□ -0.07
CPSF3-201ENST00000238112 OOSP1A8MZH6 123 aa14.61□□□□□ -0.07
CPSF3-201ENST00000238112 TMEM11P17152 192 aa14.61□□□□□ -0.07
CPSF3-201ENST00000238112 CDSNQ15517 529 aa14.61□□□□□ -0.07
CPSF3-201ENST00000238112 C12orf54Q6X4T0 127 aa14.61□□□□□ -0.07
CPSF3-201ENST00000238112 ARL6IP6Q8N6S5 226 aa14.61□□□□□ -0.07
CPSF3-201ENST00000238112 COX8CQ7Z4L0 72 aa14.61□□□□□ -0.07
CPSF3-201ENST00000238112 Q8N6K4 173 aa14.61□□□□□ -0.07
CPSF3-201ENST00000238112 SIGLEC8Q9NYZ4 499 aa14.61□□□□□ -0.07
CPSF3-201ENST00000238112 U3KQK5 164 aa14.61□□□□□ -0.07
CPSF3-201ENST00000238112 CTSGP08311 255 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 BVES-AS1Q5T3Y7 98 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 C11orf71Q6IPW1 123 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 C1orf122Q6ZSJ8 110 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 PTPRZ1P23471 2315 aaPredicted RBP14.6□□□□□ -0.07
CPSF3-201ENST00000238112 MUC21A0A0G2JKD1 596 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 MUC21A0A140T8X8 626 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 FAM106CPP0CH98 169 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 S100A7P31151 101 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 BMI1P35226 326 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 RPS20P60866 119 aaKnown RBP14.6□□□□□ -0.07
CPSF3-201ENST00000238112 FAM106AQ4KMX7 169 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 MUC21Q5SSG8 566 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 MINOS1Q5TGZ0 78 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 Q8TAT8 98 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 MINOS1-NBL1R4GNA1 71 aa14.6□□□□□ -0.07
CPSF3-201ENST00000238112 NCR2O95944 276 aa14.59□□□□□ -0.07
CPSF3-201ENST00000238112 OR8A1Q8NGG7 326 aa14.59□□□□□ -0.07
CPSF3-201ENST00000238112 MUC6Q6W4X9 2439 aa14.59□□□□□ -0.07
CPSF3-201ENST00000238112 LRBAP50851 2863 aa14.59□□□□□ -0.07
CPSF3-201ENST00000238112 EGR2P11161 476 aaPredicted RBP14.59□□□□□ -0.07
CPSF3-201ENST00000238112 ADORA2A-AS1P86434 159 aa14.59□□□□□ -0.07
CPSF3-201ENST00000238112 EBI3Q14213 229 aa14.59□□□□□ -0.07
CPSF3-201ENST00000238112 FER1L6-AS1Q8NA97 138 aa14.59□□□□□ -0.07
CPSF3-201ENST00000238112 CBY1Q9Y3M2 126 aa14.59□□□□□ -0.07
CPSF3-201ENST00000238112 HIST1H1AQ02539 215 aaPredicted RBP14.58□□□□□ -0.08
CPSF3-201ENST00000238112 LOXL1Q08397 574 aaPredicted RBP14.58□□□□□ -0.08
CPSF3-201ENST00000238112 TWIST1Q15672 202 aa14.58□□□□□ -0.08
CPSF3-201ENST00000238112 MRPL51Q4U2R6 128 aaKnown RBP14.58□□□□□ -0.08
CPSF3-201ENST00000238112 VGLL1Q99990 258 aa14.58□□□□□ -0.08
CPSF3-201ENST00000238112 SMAD5-AS1Q9Y6J3 95 aa14.58□□□□□ -0.08
CPSF3-201ENST00000238112 CEP295Q9C0D2 2601 aa14.58□□□□□ -0.08
CPSF3-201ENST00000238112 PTPRQQ9UMZ3 2332 aa14.58□□□□□ -0.08
CPSF3-201ENST00000238112 IGHV7-81A0A0B4J1V7 117 aa14.58□□□□□ -0.08
CPSF3-201ENST00000238112 VAMP3Q15836 100 aa14.58□□□□□ -0.08
CPSF3-201ENST00000238112 IGFL4Q6B9Z1 124 aa14.58□□□□□ -0.08
CPSF3-201ENST00000238112 A0A096LNJ9 63 aa14.57□□□□□ -0.08
CPSF3-201ENST00000238112 COX8AP10176 69 aa14.57□□□□□ -0.08
CPSF3-201ENST00000238112 IGHV3OR16-8A0A075B7F1 116 aa14.57□□□□□ -0.08
CPSF3-201ENST00000238112 IGHV3-35A0A0C4DH35 117 aa14.57□□□□□ -0.08
CPSF3-201ENST00000238112 CKS2P33552 79 aa14.57□□□□□ -0.08
CPSF3-201ENST00000238112 SPTA1P02549 2419 aa14.56□□□□□ -0.08
CPSF3-201ENST00000238112 A0A087X0K7 114 aa14.56□□□□□ -0.08
CPSF3-201ENST00000238112 IGHV2-70DA0A0C4DH43 119 aa14.56□□□□□ -0.08
CPSF3-201ENST00000238112 HLA-DMBP28068 263 aa14.56□□□□□ -0.08
CPSF3-201ENST00000238112 ZNF80P51504 273 aaPredicted RBP14.56□□□□□ -0.08
CPSF3-201ENST00000238112 DCHS2Q6V1P9 2916 aa14.56□□□□□ -0.08
CPSF3-201ENST00000238112 TAX1BP3O14907 124 aa14.55□□□□□ -0.08
CPSF3-201ENST00000238112 SFTPCP11686 197 aa14.55□□□□□ -0.08
CPSF3-201ENST00000238112 GPR183P32249 361 aa14.55□□□□□ -0.08
CPSF3-201ENST00000238112 DEFB125Q8N687 156 aa14.55□□□□□ -0.08
CPSF3-201ENST00000238112 OR4C5Q8NGB2 326 aa14.55□□□□□ -0.08
CPSF3-201ENST00000238112 MSRB2Q9Y3D2 182 aa14.55□□□□□ -0.08
CPSF3-201ENST00000238112 ZFP36P26651 326 aaKnown RBP14.55□□□□□ -0.08
CPSF3-201ENST00000238112 Q8N9W7 124 aa14.55□□□□□ -0.08
CPSF3-201ENST00000238112 IGHG4P01861 327 aa14.54□□□□□ -0.08
CPSF3-201ENST00000238112 HBDP02042 147 aa14.54□□□□□ -0.08
CPSF3-201ENST00000238112 ORM1P02763 201 aa14.54□□□□□ -0.08
CPSF3-201ENST00000238112 NHLH1Q02575 133 aa14.54□□□□□ -0.08
CPSF3-201ENST00000238112 SMKR1H3BMG3 65 aa14.54□□□□□ -0.08
CPSF3-201ENST00000238112 IGLC6P0CF74 106 aa14.54□□□□□ -0.08
CPSF3-201ENST00000238112 KLRB1Q12918 225 aa14.54□□□□□ -0.08
CPSF3-201ENST00000238112 C15orf32Q32M92 178 aa14.54□□□□□ -0.08
CPSF3-201ENST00000238112 RHOGP84095 191 aa14.53□□□□□ -0.08
CPSF3-201ENST00000238112 ECSCRQ19T08 205 aa14.53□□□□□ -0.08
CPSF3-201ENST00000238112 LGALS9BQ3B8N2 356 aa14.53□□□□□ -0.08
CPSF3-201ENST00000238112 LGALS9CQ6DKI2 356 aa14.53□□□□□ -0.08
CPSF3-201ENST00000238112 ERASQ7Z444 233 aa14.53□□□□□ -0.08
CPSF3-201ENST00000238112 NPYP01303 97 aa14.53□□□□□ -0.08
CPSF3-201ENST00000238112 FXYD7P58549 80 aa14.53□□□□□ -0.08
CPSF3-201ENST00000238112 SRSF2Q01130 221 aaKnown RBP14.53□□□□□ -0.08
CPSF3-201ENST00000238112 FAM110DQ8TAY7 271 aaPredicted RBP14.53□□□□□ -0.08
CPSF3-201ENST00000238112 SNAI2O43623 268 aa14.52□□□□□ -0.08
CPSF3-201ENST00000238112 RAB9AP51151 201 aa14.52□□□□□ -0.08
CPSF3-201ENST00000238112 CACNG7P62955 275 aa14.52□□□□□ -0.08
CPSF3-201ENST00000238112 DPF1Q92782 380 aa14.52□□□□□ -0.08
CPSF3-201ENST00000238112 SIRPDQ9H106 197 aa14.52□□□□□ -0.08
CPSF3-201ENST00000238112 FABP5P3A8MUU1 101 aa14.52□□□□□ -0.09
CPSF3-201ENST00000238112 ZNF502Q8TBZ5 544 aa14.52□□□□□ -0.09
CPSF3-201ENST00000238112 CBY3A6NI87 242 aa14.51□□□□□ -0.09
CPSF3-201ENST00000238112 CLEC3BP05452 202 aa14.51□□□□□ -0.09
CPSF3-201ENST00000238112 C2orf91Q6ZV80 131 aa14.51□□□□□ -0.09
CPSF3-201ENST00000238112 DTX2Q86UW9 622 aa14.51□□□□□ -0.09
CPSF3-201ENST00000238112 CD5LO43866 347 aa14.5□□□□□ -0.09
CPSF3-201ENST00000238112 ERCC8Q13216 396 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms