RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 HIST1H2BHQ93079 126 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 HIST1H2BNQ99877 126 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 HIST1H2BMQ99879 126 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 A0A1B0GW64 132 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 LINC00311Q8N616 119 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 NDUFA4L2Q9NRX3 87 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 ZNF407Q9C0G0 2248 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 MPDZO75970 2070 aa15.21■□□□□ 0.03
SMPD3-201ENST00000219334 PRR31Q5SQ13 230 aa15.21■□□□□ 0.03
SMPD3-201ENST00000219334 TMEM14BQ9NUH8 114 aa15.21■□□□□ 0.03
SMPD3-201ENST00000219334 PCNX1Q96RV3 2341 aa15.21■□□□□ 0.02
SMPD3-201ENST00000219334 HSD52Q0P140 79 aa15.2■□□□□ 0.02
SMPD3-201ENST00000219334 TMEM158Q8WZ71 300 aa15.2■□□□□ 0.02
SMPD3-201ENST00000219334 AZU1P20160 251 aa15.2■□□□□ 0.02
SMPD3-201ENST00000219334 FANCMQ8IYD8 2048 aa15.2■□□□□ 0.02
SMPD3-201ENST00000219334 TRBV25-1A0A075B6N4 114 aa15.2■□□□□ 0.02
SMPD3-201ENST00000219334 MRPL27Q9P0M9 148 aaKnown RBP15.2■□□□□ 0.02
SMPD3-201ENST00000219334 DUX4L9Q6RFH8 374 aaPredicted RBP15.2■□□□□ 0.02
SMPD3-201ENST00000219334 LEPROTO15243 131 aa15.2■□□□□ 0.02
SMPD3-201ENST00000219334 C17orf58Q2M2W7 97 aa15.2■□□□□ 0.02
SMPD3-201ENST00000219334 ZNF479Q96JC4 524 aa15.2■□□□□ 0.02
SMPD3-201ENST00000219334 IGKV1-6A0A0C4DH72 117 aa15.19■□□□□ 0.02
SMPD3-201ENST00000219334 GAGE12BA1L429 117 aa15.19■□□□□ 0.02
SMPD3-201ENST00000219334 GAGE7O76087 117 aa15.19■□□□□ 0.02
SMPD3-201ENST00000219334 GAGE12FP0CL80 117 aa15.19■□□□□ 0.02
SMPD3-201ENST00000219334 GAGE12GP0CL81 117 aa15.19■□□□□ 0.02
SMPD3-201ENST00000219334 GAGE12IP0CL82 117 aa15.19■□□□□ 0.02
SMPD3-201ENST00000219334 KLK9Q9UKQ9 250 aa15.19■□□□□ 0.02
SMPD3-201ENST00000219334 TCF15Q12870 199 aa15.19■□□□□ 0.02
SMPD3-201ENST00000219334 HAPLN4Q86UW8 402 aa15.19■□□□□ 0.02
SMPD3-201ENST00000219334 TIMM21Q9BVV7 248 aa15.19■□□□□ 0.02
SMPD3-201ENST00000219334 AMN1Q8IY45 258 aa15.19■□□□□ 0.02
SMPD3-201ENST00000219334 IGHV1OR15-1A0A075B7D0 117 aa15.19■□□□□ 0.02
SMPD3-201ENST00000219334 PHF3Q92576 2039 aaKnown RBP15.18■□□□□ 0.02
SMPD3-201ENST00000219334 A8MWV9 139 aa15.18■□□□□ 0.02
SMPD3-201ENST00000219334 RMI2Q96E14 147 aa15.18■□□□□ 0.02
SMPD3-201ENST00000219334 SLX1AQ9BQ83 275 aa15.18■□□□□ 0.02
SMPD3-201ENST00000219334 FNDC1Q4ZHG4 1894 aaPredicted RBP15.18■□□□□ 0.02
SMPD3-201ENST00000219334 IGHV3-16A0A0C4DH30 117 aa15.18■□□□□ 0.02
SMPD3-201ENST00000219334 PFN1P07737 140 aaKnown RBP15.18■□□□□ 0.02
SMPD3-201ENST00000219334 FHL1Q13642 323 aa15.18■□□□□ 0.02
SMPD3-201ENST00000219334 PAX9P55771 341 aa15.17■□□□□ 0.02
SMPD3-201ENST00000219334 SPXQ9BT56 116 aa15.17■□□□□ 0.02
SMPD3-201ENST00000219334 CGB3P0DN86 165 aa15.17■□□□□ 0.02
SMPD3-201ENST00000219334 DEFB113Q30KQ7 82 aa15.17■□□□□ 0.02
SMPD3-201ENST00000219334 DMRTC2Q8IXT2 367 aaPredicted RBP15.17■□□□□ 0.02
SMPD3-201ENST00000219334 VWA8A3KMH1 1905 aa15.17■□□□□ 0.02
SMPD3-201ENST00000219334 FNDC4Q9H6D8 234 aaPredicted RBP15.17■□□□□ 0.02
SMPD3-201ENST00000219334 SMKR1H3BMG3 65 aa15.17■□□□□ 0.02
SMPD3-201ENST00000219334 CDKN1BP46527 198 aa15.17■□□□□ 0.02
SMPD3-201ENST00000219334 TMEM75Q8N9X5 138 aa15.17■□□□□ 0.02
SMPD3-201ENST00000219334 C8orf86Q6ZUL3 223 aa15.16■□□□□ 0.02
SMPD3-201ENST00000219334 ANAPC10Q9UM13 185 aa15.16■□□□□ 0.02
SMPD3-201ENST00000219334 ATRXP46100 2492 aa15.16■□□□□ 0.02
SMPD3-201ENST00000219334 WDR86Q86TI4 376 aa15.16■□□□□ 0.02
SMPD3-201ENST00000219334 FAM208BQ5VWN6 2430 aa15.16■□□□□ 0.02
SMPD3-201ENST00000219334 VPREB3Q9UKI3 123 aa15.16■□□□□ 0.02
SMPD3-201ENST00000219334 KAAG1Q9UBP8 84 aa15.15■□□□□ 0.02
SMPD3-201ENST00000219334 GFRA4Q9GZZ7 299 aa15.15■□□□□ 0.02
SMPD3-201ENST00000219334 TSSC4Q9Y5U2 329 aaPredicted RBP15.15■□□□□ 0.02
SMPD3-201ENST00000219334 WISP1O95388 367 aa15.15■□□□□ 0.02
SMPD3-201ENST00000219334 DEFB112Q30KQ8 113 aa15.15■□□□□ 0.02
SMPD3-201ENST00000219334 ZNF503-AS2A6NEH8 195 aa15.14■□□□□ 0.01
SMPD3-201ENST00000219334 IGHV2-5P01817 119 aa15.14■□□□□ 0.01
SMPD3-201ENST00000219334 CXCL1P09341 107 aa15.14■□□□□ 0.01
SMPD3-201ENST00000219334 LINC00479Q96M42 142 aa15.14■□□□□ 0.01
SMPD3-201ENST00000219334 TRBV19A0A075B6N1 114 aa15.14■□□□□ 0.01
SMPD3-201ENST00000219334 TRAV8-4A0A0B4J246 113 aa15.14■□□□□ 0.01
SMPD3-201ENST00000219334 PRB1P04280 392 aa15.13■□□□□ 0.01
SMPD3-201ENST00000219334 CGB7P0DN87 165 aa15.13■□□□□ 0.01
SMPD3-201ENST00000219334 NDUFS7O75251 213 aa15.13■□□□□ 0.01
SMPD3-201ENST00000219334 TNFRSF6BO95407 300 aa15.13■□□□□ 0.01
SMPD3-201ENST00000219334 OVOL2Q9BRP0 275 aa15.13■□□□□ 0.01
SMPD3-201ENST00000219334 LGALS1P09382 135 aaKnown RBP15.13■□□□□ 0.01
SMPD3-201ENST00000219334 MUC6Q6W4X9 2439 aa15.13■□□□□ 0.01
SMPD3-201ENST00000219334 MRAPQ8TCY5 172 aa15.13■□□□□ 0.01
SMPD3-201ENST00000219334 YLPM1P49750 1951 aaKnown RBP15.12■□□□□ 0.01
SMPD3-201ENST00000219334 HIST1H2BLQ99880 126 aa15.12■□□□□ 0.01
SMPD3-201ENST00000219334 GSN-AS1Q9NRJ2 163 aa15.12■□□□□ 0.01
SMPD3-201ENST00000219334 VWC2Q2TAL6 325 aa15.12■□□□□ 0.01
SMPD3-201ENST00000219334 H3BUA1 57 aa15.12■□□□□ 0.01
SMPD3-201ENST00000219334 DLX4Q92988 240 aaPredicted RBP15.12■□□□□ 0.01
SMPD3-201ENST00000219334 TICRRQ7Z2Z1 1910 aa15.12■□□□□ 0.01
SMPD3-201ENST00000219334 IGHV7-4-1A0A0J9YVY3 117 aa15.12■□□□□ 0.01
SMPD3-201ENST00000219334 SHISA9B4DS77 424 aa15.12■□□□□ 0.01
SMPD3-201ENST00000219334 GRNP28799 593 aaKnown RBP15.12■□□□□ 0.01
SMPD3-201ENST00000219334 FAM120AOSQ5T036 256 aa15.12■□□□□ 0.01
SMPD3-201ENST00000219334 BCL6BQ8N143 479 aaPredicted RBP15.12■□□□□ 0.01
SMPD3-201ENST00000219334 ZNRF2Q8NHG8 242 aa15.12■□□□□ 0.01
SMPD3-201ENST00000219334 TMEM243Q9BU79 118 aa15.12■□□□□ 0.01
SMPD3-201ENST00000219334 TRAV12-2A0A075B6T6 113 aa15.11■□□□□ 0.01
SMPD3-201ENST00000219334 IGHV4-59P01825 116 aa15.11■□□□□ 0.01
SMPD3-201ENST00000219334 SRSF4Q08170 494 aaKnown RBP15.11■□□□□ 0.01
SMPD3-201ENST00000219334 GUSBP1Q15486 140 aa15.11■□□□□ 0.01
SMPD3-201ENST00000219334 A0A1B0GV72 72 aa15.11■□□□□ 0.01
SMPD3-201ENST00000219334 I3L3M4 83 aa15.11■□□□□ 0.01
SMPD3-201ENST00000219334 ZC2HC1BQ5TFG8 222 aa15.11■□□□□ 0.01
SMPD3-201ENST00000219334 SAMD5Q5TGI4 173 aa15.11■□□□□ 0.01
SMPD3-201ENST00000219334 NKAPP1Q8N9T2 125 aa15.11■□□□□ 0.01
SMPD3-201ENST00000219334 NDUFAF3Q9BU61 184 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms