RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TCRAP04437 139 aa12.9□□□□□ -0.34
CLN3-252ENST00000636907 CRYBA1P05813 215 aa12.9□□□□□ -0.34
CLN3-252ENST00000636907 FOSL1P15407 271 aa12.9□□□□□ -0.34
CLN3-252ENST00000636907 ATG101Q9BSB4 218 aa12.9□□□□□ -0.34
CLN3-252ENST00000636907 TUBA4BQ9H853 241 aa12.9□□□□□ -0.34
CLN3-252ENST00000636907 LY96Q9Y6Y9 160 aa12.9□□□□□ -0.34
CLN3-252ENST00000636907 ZNF785A8K8V0 405 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 INAFM1C9JVW0 142 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 K7EN84 100 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 GALR1P47211 349 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 TAS2R60P59551 318 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 C16orf54Q6UWD8 224 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 GPHB5Q86YW7 130 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 CMTM2Q8TAZ6 248 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 A0A087X0K7 114 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 ISLRO14498 428 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 MT-ND4LP03901 98 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 PSG9Q00887 426 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 TM4SF20Q53R12 229 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 TCTEX1D4Q5JR98 221 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 C18orf65Q6ZTR6 163 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 CTDSP1Q9GZU7 261 aa12.89□□□□□ -0.35
CLN3-252ENST00000636907 IGHV4OR15-8A0A075B7B6 117 aa12.88□□□□□ -0.35
CLN3-252ENST00000636907 A0A087WW49 117 aa12.88□□□□□ -0.35
CLN3-252ENST00000636907 IGLV2-8P01709 118 aa12.88□□□□□ -0.35
CLN3-252ENST00000636907 TMEM183BQ1AE95 376 aa12.88□□□□□ -0.35
CLN3-252ENST00000636907 RPEL1Q2QD12 228 aa12.88□□□□□ -0.35
CLN3-252ENST00000636907 FAM106AQ4KMX7 169 aa12.88□□□□□ -0.35
CLN3-252ENST00000636907 GLMPQ8WWB7 406 aa12.88□□□□□ -0.35
CLN3-252ENST00000636907 SGK494Q96LW2 274 aa12.88□□□□□ -0.35
CLN3-252ENST00000636907 AAMDCQ9H7C9 122 aa12.88□□□□□ -0.35
CLN3-252ENST00000636907 TMEM242Q9NWH2 141 aa12.88□□□□□ -0.35
CLN3-252ENST00000636907 KLF12Q9Y4X4 402 aa12.88□□□□□ -0.35
CLN3-252ENST00000636907 COLCA2A8K830 154 aa12.87□□□□□ -0.35
CLN3-252ENST00000636907 M0R3E3 92 aa12.87□□□□□ -0.35
CLN3-252ENST00000636907 ZNF253O75346 499 aa12.87□□□□□ -0.35
CLN3-252ENST00000636907 PRB4P10163 310 aaPredicted RBP12.87□□□□□ -0.35
CLN3-252ENST00000636907 UBE2G1P62253 170 aa12.87□□□□□ -0.35
CLN3-252ENST00000636907 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.87□□□□□ -0.35
CLN3-252ENST00000636907 C15orf54Q8N8G6 183 aa12.87□□□□□ -0.35
CLN3-252ENST00000636907 WIPF2Q8TF74 440 aaPredicted RBP12.87□□□□□ -0.35
CLN3-252ENST00000636907 PRELID1Q9Y255 219 aa12.87□□□□□ -0.35
CLN3-252ENST00000636907 TMA7Q9Y2S6 64 aaKnown RBP12.87□□□□□ -0.35
CLN3-252ENST00000636907 CXorf65A6NEN9 183 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 IGFL4Q6B9Z1 124 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 GOLT1AQ6ZVE7 132 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 NHLRC2Q8NBF2 726 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 ANAPC16Q96DE5 110 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 YPEL4Q96NS1 127 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 C16orf95Q9H693 158 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 ZNF331Q9NQX6 463 aaPredicted RBP12.86□□□□□ -0.35
CLN3-252ENST00000636907 DAZ1Q9NQZ3 744 aaKnown RBP12.86□□□□□ -0.35
CLN3-252ENST00000636907 IGHV7-4-1A0A0J9YVY3 117 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 A0A1W2PS18 150 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 K7EMT4 169 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 OR5I1Q13606 314 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 BAGE2Q86Y30 109 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 FAM24BQ8N5W8 94 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 LINC01006Q8NI28 216 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 SFRP2Q96HF1 295 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 FMC1Q96HJ9 113 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 JMJD8Q96S16 334 aa12.86□□□□□ -0.35
CLN3-252ENST00000636907 TRAV8-1A0A0A6YYK1 113 aa12.85□□□□□ -0.35
CLN3-252ENST00000636907 DIRC3C9JPN6 131 aa12.85□□□□□ -0.35
CLN3-252ENST00000636907 H7BYZ3 331 aa12.85□□□□□ -0.35
CLN3-252ENST00000636907 S100A9P06702 114 aaKnown RBP12.85□□□□□ -0.35
CLN3-252ENST00000636907 EDN2P20800 178 aa12.85□□□□□ -0.35
CLN3-252ENST00000636907 HLA-DMBP28068 263 aa12.85□□□□□ -0.35
CLN3-252ENST00000636907 CDX1P47902 265 aaPredicted RBP12.85□□□□□ -0.35
CLN3-252ENST00000636907 GRAMD2BQ96HH9 432 aa12.85□□□□□ -0.35
CLN3-252ENST00000636907 RHPN1-AS1Q9BWJ2 59 aa12.85□□□□□ -0.35
CLN3-252ENST00000636907 URGCP-MRPS24S4R325 110 aa12.85□□□□□ -0.35
CLN3-252ENST00000636907 GCGP01275 180 aa12.84□□□□□ -0.35
CLN3-252ENST00000636907 MGST1P10620 155 aaKnown RBP12.84□□□□□ -0.35
CLN3-252ENST00000636907 DEFB136Q30KP8 78 aa12.84□□□□□ -0.35
CLN3-252ENST00000636907 KHDC1LQ5JSQ8 128 aa12.84□□□□□ -0.35
CLN3-252ENST00000636907 HIST2H2BDQ6DRA6 164 aa12.84□□□□□ -0.35
CLN3-252ENST00000636907 SMPXQ9UHP9 88 aa12.84□□□□□ -0.35
CLN3-252ENST00000636907 UFC1Q9Y3C8 167 aa12.84□□□□□ -0.35
CLN3-252ENST00000636907 HIVEP1P15822 2718 aa12.84□□□□□ -0.35
CLN3-252ENST00000636907 IGLV2-11P01706 119 aa12.83□□□□□ -0.35
CLN3-252ENST00000636907 HOXD3P31249 432 aaPredicted RBP12.83□□□□□ -0.35
CLN3-252ENST00000636907 ELOBQ15370 118 aa12.83□□□□□ -0.35
CLN3-252ENST00000636907 C4orf3Q8WVX3 66 aa12.83□□□□□ -0.35
CLN3-252ENST00000636907 SLC50A1Q9BRV3 221 aa12.83□□□□□ -0.35
CLN3-252ENST00000636907 TRAV8-2A0A0B4J237 113 aa12.83□□□□□ -0.36
CLN3-252ENST00000636907 TMEM213A2RRL7 107 aa12.83□□□□□ -0.36
CLN3-252ENST00000636907 CHEK1O14757 476 aa12.83□□□□□ -0.36
CLN3-252ENST00000636907 LTAP01374 205 aa12.83□□□□□ -0.36
CLN3-252ENST00000636907 CSN1S1P47710 185 aa12.83□□□□□ -0.36
CLN3-252ENST00000636907 MEOX2P50222 304 aa12.83□□□□□ -0.36
CLN3-252ENST00000636907 SYNJ2BPP57105 145 aa12.83□□□□□ -0.36
CLN3-252ENST00000636907 C8orf86Q6ZUL3 223 aa12.83□□□□□ -0.36
CLN3-252ENST00000636907 REC114Q7Z4M0 266 aa12.83□□□□□ -0.36
CLN3-252ENST00000636907 Q86TA4 180 aa12.83□□□□□ -0.36
CLN3-252ENST00000636907 TMEM75Q8N9X5 138 aa12.83□□□□□ -0.36
CLN3-252ENST00000636907 OR10G8Q8NGN5 311 aa12.83□□□□□ -0.36
CLN3-252ENST00000636907 FLNBO75369 2602 aaKnown RBP12.83□□□□□ -0.36
CLN3-252ENST00000636907 NF1P21359 2839 aa12.82□□□□□ -0.36
CLN3-252ENST00000636907 K7EQM0 130 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms