RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 KIR2DL5BA0A0G2JPC4 375 aa13.1□□□□□ -0.31
CLN3-247ENST00000636351 H3BTX0 84 aa13.1□□□□□ -0.31
CLN3-247ENST00000636351 MRPS12O15235 138 aaKnown RBP13.1□□□□□ -0.31
CLN3-247ENST00000636351 IGFL4Q6B9Z1 124 aa13.1□□□□□ -0.31
CLN3-247ENST00000636351 RPL7L1Q6DKI1 246 aaKnown RBP13.1□□□□□ -0.31
CLN3-247ENST00000636351 LCN15Q6UWW0 184 aa13.1□□□□□ -0.31
CLN3-247ENST00000636351 KIR2DL5AQ8N109 375 aa13.1□□□□□ -0.31
CLN3-247ENST00000636351 KIR2DL5BQ8NHK3 375 aa13.1□□□□□ -0.31
CLN3-247ENST00000636351 C17orf77Q96MU5 243 aa13.1□□□□□ -0.31
CLN3-247ENST00000636351 RPRMQ9NS64 109 aa13.1□□□□□ -0.31
CLN3-247ENST00000636351 ALMS1Q8TCU4 4167 aa13.1□□□□□ -0.31
CLN3-247ENST00000636351 CXCL2P19875 107 aa13.09□□□□□ -0.31
CLN3-247ENST00000636351 ATP6V0CP27449 155 aa13.09□□□□□ -0.31
CLN3-247ENST00000636351 DEFB1P60022 68 aa13.09□□□□□ -0.31
CLN3-247ENST00000636351 RNF182Q8N6D2 247 aa13.09□□□□□ -0.31
CLN3-247ENST00000636351 ZNF738Q8NE65 137 aa13.09□□□□□ -0.31
CLN3-247ENST00000636351 OR11H4Q8NGC9 324 aa13.09□□□□□ -0.31
CLN3-247ENST00000636351 ST6GAL2Q96JF0 529 aa13.09□□□□□ -0.31
CLN3-247ENST00000636351 C20orf173Q96LM9 149 aa13.09□□□□□ -0.31
CLN3-247ENST00000636351 SLC25A2Q9BXI2 301 aa13.09□□□□□ -0.31
CLN3-247ENST00000636351 FUT9Q9Y231 359 aa13.09□□□□□ -0.31
CLN3-247ENST00000636351 AGRNO00468 2067 aa13.09□□□□□ -0.31
CLN3-247ENST00000636351 TAAR5O14804 337 aa13.08□□□□□ -0.32
CLN3-247ENST00000636351 CA1P00915 261 aaPredicted RBP13.08□□□□□ -0.32
CLN3-247ENST00000636351 IGLC2P0DOY2 106 aa13.08□□□□□ -0.32
CLN3-247ENST00000636351 PYYP10082 97 aa13.08□□□□□ -0.32
CLN3-247ENST00000636351 M6PRP20645 277 aa13.08□□□□□ -0.32
CLN3-247ENST00000636351 RAB2AP61019 212 aa13.08□□□□□ -0.32
CLN3-247ENST00000636351 RHOBP62745 196 aa13.08□□□□□ -0.32
CLN3-247ENST00000636351 EBLN2Q6P2I7 272 aa13.08□□□□□ -0.32
CLN3-247ENST00000636351 FOXI2Q6ZQN5 318 aa13.08□□□□□ -0.32
CLN3-247ENST00000636351 TRPT1Q86TN4 253 aaKnown RBP13.08□□□□□ -0.32
CLN3-247ENST00000636351 AKAP14Q86UN6 197 aa13.08□□□□□ -0.32
CLN3-247ENST00000636351 SLC50A1Q9BRV3 221 aa13.08□□□□□ -0.32
CLN3-247ENST00000636351 CSTL1Q9H114 145 aa13.08□□□□□ -0.32
CLN3-247ENST00000636351 SH3BGRL3Q9H299 93 aa13.08□□□□□ -0.32
CLN3-247ENST00000636351 HRH4Q9H3N8 390 aa13.08□□□□□ -0.32
CLN3-247ENST00000636351 TRAV8-2A0A0B4J237 113 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 HMSDA8MTL9 139 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 H3BQ15 152 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 UBE2CO00762 179 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 OR7C2O60412 319 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 HLA-DRB4P13762 266 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 HLA-DMBP28068 263 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 TAS2R45P59539 299 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 ZNF345Q14585 488 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 GUK1Q16774 197 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 DEFB135Q30KP9 77 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 FAM122CQ6P4D5 195 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 TCTE3Q8IZS6 198 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 GNPNAT1Q96EK6 184 aaPredicted RBP13.07□□□□□ -0.32
CLN3-247ENST00000636351 ARPC5LQ9BPX5 153 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 PSMG3Q9BT73 122 aaPredicted RBP13.07□□□□□ -0.32
CLN3-247ENST00000636351 TMEM14CQ9P0S9 112 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 HLA-DRB4X5D2U9 266 aa13.07□□□□□ -0.32
CLN3-247ENST00000636351 A0A1W2PPV4 95 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 F6UB75 175 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 SLC17A3O00476 420 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 IGKV3-20P01619 116 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 KHDC3LQ587J8 217 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 GDF5OSQ5U4N7 250 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 KCNRGQ8N5I3 272 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 OR10G4Q8NGN3 311 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 OR10G9Q8NGN4 311 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 OR10G7Q8NGN6 311 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 OR2G3Q8NGZ4 309 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 BLNKQ8WV28 456 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 PAXXQ9BUH6 204 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 SAV1Q9H4B6 383 aaPredicted RBP13.06□□□□□ -0.32
CLN3-247ENST00000636351 ZNF331Q9NQX6 463 aaPredicted RBP13.06□□□□□ -0.32
CLN3-247ENST00000636351 ZNF586Q9NXT0 402 aa13.06□□□□□ -0.32
CLN3-247ENST00000636351 A0A0D9SG52 128 aa13.05□□□□□ -0.32
CLN3-247ENST00000636351 KANTRA0A1W2PQU2 76 aa13.05□□□□□ -0.32
CLN3-247ENST00000636351 H3BMM0 161 aa13.05□□□□□ -0.32
CLN3-247ENST00000636351 HIST1H1EP10412 219 aaKnown RBP13.05□□□□□ -0.32
CLN3-247ENST00000636351 SPP1P10451 314 aa13.05□□□□□ -0.32
CLN3-247ENST00000636351 PSG3Q16557 428 aa13.05□□□□□ -0.32
CLN3-247ENST00000636351 OR4B1Q8NGF8 309 aa13.05□□□□□ -0.32
CLN3-247ENST00000636351 FAM167A-AS1Q96KT0 104 aa13.05□□□□□ -0.32
CLN3-247ENST00000636351 OR51M1Q9H341 326 aa13.05□□□□□ -0.32
CLN3-247ENST00000636351 PFDN1O60925 122 aa13.04□□□□□ -0.32
CLN3-247ENST00000636351 EIF3GO75821 320 aaKnown RBP eCLIP13.04□□□□□ -0.32
CLN3-247ENST00000636351 MBP02144 154 aa13.04□□□□□ -0.32
CLN3-247ENST00000636351 OR10J4P0C629 311 aa13.04□□□□□ -0.32
CLN3-247ENST00000636351 NUTF2P61970 127 aaKnown RBP13.04□□□□□ -0.32
CLN3-247ENST00000636351 UBE2L3P68036 154 aaKnown RBP13.04□□□□□ -0.32
CLN3-247ENST00000636351 SERF2P84101 59 aa13.04□□□□□ -0.32
CLN3-247ENST00000636351 MORN3Q6PF18 240 aaPredicted RBP13.04□□□□□ -0.32
CLN3-247ENST00000636351 Q6ZWC4 215 aa13.04□□□□□ -0.32
CLN3-247ENST00000636351 TRBV19A0A075B6N1 114 aa13.03□□□□□ -0.32
CLN3-247ENST00000636351 A0A0J9YX75 114 aa13.03□□□□□ -0.32
CLN3-247ENST00000636351 A0A1B0GVG6 124 aa13.03□□□□□ -0.32
CLN3-247ENST00000636351 BCL2L11O43521 198 aa13.03□□□□□ -0.32
CLN3-247ENST00000636351 PRB4P10163 310 aaPredicted RBP13.03□□□□□ -0.32
CLN3-247ENST00000636351 C4BPBP20851 252 aa13.03□□□□□ -0.32
CLN3-247ENST00000636351 CDC34P49427 236 aaPredicted RBP13.03□□□□□ -0.32
CLN3-247ENST00000636351 RPUSD4Q96CM3 377 aaKnown RBP13.03□□□□□ -0.32
CLN3-247ENST00000636351 ZNF471Q9BX82 626 aaPredicted RBP13.03□□□□□ -0.32
CLN3-247ENST00000636351 HMGB3O15347 200 aaKnown RBP13.02□□□□□ -0.33
CLN3-247ENST00000636351 SPRY2O43597 315 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms